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Petr Popov Sergei Grudinin Andrii Kurdiuk Pavel Buslaev Stephane Redon 《Journal of computational chemistry》2019,40(27):2391-2399
In this study, we propose a novel optimization algorithm, with application to the refinement of molecular complexes. Particularly, we consider optimization problem as the calculation of quasi-static trajectories of rigid bodies influenced by the inverse-inertia-weighted energy gradient and introduce the concept of advancement region that guarantees displacement of a molecule strictly within a relevant region of conformational space. The advancement region helps to avoid typical energy minimization pitfalls, thus, the algorithm is suitable to work with arbitrary energy functions and arbitrary types of molecular complexes without necessary tuning of its hyper-parameters. Our method, called controlled-advancement rigid-body optimization of nanosystems (Carbon), is particularly useful for the large-scale molecular refinement, as for example, the putative binding candidates obtained with protein–protein docking pipelines. Implementation of Carbon with user-friendly interface is available in the SAMSON platform for molecular modeling at https://www.samson-connect.net . © 2019 Wiley Periodicals, Inc. 相似文献
85.
Etienne Boutin Min Wang John C. Lin Matthieu Mesnage Daniela Mendoza Benedikt Lassalle‐Kaiser Christopher Hahn Thomas F. Jaramillo Marc Robert 《Angewandte Chemie (Weinheim an der Bergstrasse, Germany)》2019,131(45):16318-16322
Conversion of CO2 into valuable molecules is a field of intensive investigation with the aim of developing scalable technologies for making fuels using renewable energy sources. While electrochemical reduction into CO and formate are approaching industrial maturity, a current challenge is obtaining more reduced products like methanol. However, literature on the matter is scarce, and even more for the use of molecular catalysts. Here, we demonstrate that cobalt phthalocyanine, a well‐known catalyst for the electrochemical conversion of CO2 to CO, can also catalyze the reaction from CO2 or CO to methanol in aqueous electrolytes at ambient conditions of temperature and pressure. The studies identify formaldehyde as a key intermediate and an unexpected pH effect on selectivity. This paves the way for establishing a sequential process where CO2 is first converted to CO which is subsequently used as a reactant to produce methanol. Under ideal conditions, the reaction shows a global Faradaic efficiency of 19.5 % and chemical selectivity of 7.5 %. 相似文献
86.
Etienne A. Lapierre Prof. Warren E. Piers Jian-Bin Lin Chris Gendy 《Chemistry (Weinheim an der Bergstrasse, Germany)》2019,25(17):4305-4308
Isolable cationic PtII and PtIV alkylidenes, proposed intermediates in catalytic organic transformations, are reported. The bonding in these species was probed by experimental, structural, spectroscopic, electrochemical and computational methods, providing direct evidence for π-bonding, the often-theorized relativistic stabilization of these species, and the influence of oxidation state. 相似文献
87.
Anaïs Coffinet Dr. David Specklin Dr. Laure Vendier Prof. Dr. Michel Etienne Dr. Antoine Simonneau 《Chemistry (Weinheim an der Bergstrasse, Germany)》2019,25(63):14300-14303
The first example of a formal 1,3-B−H bond addition across the M−N≡N unit of an end-on dinitrogen complex has been achieved. The use of Piers’ borane HB(C6F5)2 was essential to observe this reactivity and it plays a triple role in this transformation: 1) electrophilic N2-borylation agent, 2) Lewis acid in a frustrated Lewis pair-type B−H bond activation, and 3) hydride shuttle to the metal center. This chemistry is supported by NMR spectroscopy and solid-state characterization of products and intermediates. The combination of chelate effect and strong σ donation in the diphosphine ligand 1,2-bis(diethylphosphino)ethane was mandatory to avoid phosphine dissociation that otherwise led to complexes where borylation of N2 occurred without hydride transfer. 相似文献
88.
Vi Le Etienne Pardoux 《Stochastics An International Journal of Probability and Stochastic Processes》2020,92(6):852-875
Consider a general continuous-state branching process with additional interaction, which destroys the branching property. We give precise conditions on the interaction term, in order to decide whether the extinction time of the process remains or not bounded as the initial value tends to infinity, and similarly for the total mass of the process. 相似文献
89.
It is shown that, when a Monte Carlo algorithm is used for estimation of any physical quantity A, a simple and fast additional procedure can be implemented that simultaneously estimates the sensitivity of A to any problem parameter. The proposed approach is general and systematic in the sense that: (i) it includes domain-deformation sensitivities, i.e., cases where a change in the parameter modifies the domain over which the sampled random variables are defined and (ii) a simple generic procedure is presented to address all remaining free choices in terms of variance minimization. 相似文献
90.
Gagnon E Thomann I Paul A Lytle AL Backus S Murnane MM Kapteyn HC Sandhu AS 《Optics letters》2006,31(12):1866-1868
We demonstrate a carrier-envelope phase (CEP) stabilized, chirped pulse laser amplifier that exhibits greatly improved intrinsic long-term CEP stability compared with that of other amplifiers. This system employs a grating-based stretcher and compressor and a cryogenically cooled laser amplifier. Single-shot carrier envelope phase noise measurements are also presented that avoid underestimation of this parameter caused by fringe averaging and represent a rigorously accurate upper limit on CEP noise. 相似文献