Richardson–Lucy deconvolution of reflection electron energy loss spectra

A procedure for deconvolving the energy spread introduced by the primary beam and the analyzer in a reflection electron energy loss spectrum (REELS) has been developed. The procedure is based on the Richardson–Lucy (RL) algorithm. The approach has been successfully tested on experimental spectra by comparison with spectra with an inherent high‐energy resolution. As a typical result, it was found that the effective energy resolution of spectra with a full width half maximum (FWHM) of the elastic peak of ～1.5 eV in the raw experimental data can be reduced to ～0.7 eV in the deconvoluted spectra. Copyright © 2009 John Wiley & Sons, Ltd.     

Simulation of semidilute suspensions of non-Brownian fibers in shear flow

Particle-level simulations are performed to study semidilute suspensions of monodispersed non-Brownian fibers in shear flow, with a Newtonian fluid medium. The incompressible three-dimensional Navier-Stokes equations are used to describe the motion of the medium, while fibers are modeled as chains of fiber segments, interacting with the fluid through viscous drag forces. The two-way coupling between the solids and the fluid phase is taken into account by enforcing momentum conservation. The model includes long-range and short-range hydrodynamic fiber-fiber interactions, as well as mechanical interactions. The simulations rendered the time-dependent fiber orientation distribution, whose time average was found to agree with experimental data in the literature. The viscosity and first normal stress difference was calculated from the orientation distribution using the slender body theory of Batchelor [J. Fluid Mech. 46, 813 (1971)], with corrections for the finite fiber aspect ratios. The viscosity was also obtained from direct computation of the shear stresses of the suspension for comparison. These two types of predictions compared well in the semidilute regime. At higher concentrations, however, a discrepancy was seen, most likely due to mechanical interactions, which are only accounted for in the direct computation method. The simulated viscosity determined directly from shear stresses was in fair agreement with experimental data found in the literature. The first normal stress difference was found to be proportional to the square of the volume concentration of fibers in the semidilute regime. As concentrations approached the concentrated regime, the first normal stress difference became proportional to volume concentration. It was also found that the coefficient of friction has a strong influence on the tendency for flocculation as well as the apparent viscosity of the suspension in the semidilute regime.     

Phosphino-Phosphination Reactions: Frustrated Lewis Pair Reactivity of Phosphino-Phosphonium Cations with Alkynes

The phosphino-phosphonium cations of the form [R₃PPR′₂]⁺ are labile and provide access to the constituent Lewis acidic and Lewis basic fragments. This permits frustrated Lewis pair-type addition reactions to alkynes, affording unprecedented phosphino-phosphination reactions and giving cations of the form [cis-R₃PCHC(R′′)PR′₂]⁺. This reactivity is further adapted to prepare several examples of a rare class of dissymmetric cis-olefin-linked bidentate phosphines.     

Enantioselective, potentiometric membrane electrodes based on cyclodextrins: application for the determination of R-baclofen in its pharmaceutical formulation

Two enantioselective, potentiometric membrane electrodes based on α- and γ-cyclodextrins were proposed for the assay of R-baclofen. The slopes of the electrodes were 59.50 and 51.00 mV/pR-baclofen for α- and γ-cyclodextrin-based electrodes, respectively. The detection limits of the proposed electrodes were 7 × 10⁻⁹ mol l⁻¹ for α-cyclodextrin-based electrode and 1.44 × 10⁻¹⁰ mol l⁻¹ for γ-cyclodextrin-based electrode. The enantioselectivity was determined over S-baclofen. The proposed electrodes can be employed for the assay of R-baclofen raw materials and its pharmaceutical formulation, Norton-Baclofen^® tablets. The surfaces of the electrodes are stable and easily renewable by polishing on alumina paper.     

Xanthophyll-cycle dependence of the energy transfer between carotenoid dark states and chlorophylls in NPQ mutants of living plants and in LHC II

The Car S₁ → Chl energy transfer efficiency, Φ_Transfer, in xanthophyll-cycle mutants of living plants and LHC II was investigated by selective Car S₁ two-photon excitation. Before high-light illumination Φ_Transfer, of the violaxanthin deficient mutant npq2 is 30% smaller than the corresponding value for wild type plants. For the zeaxanthin deficient mutant, npq1, Φ_Transfer is 30% larger. Wild type Arabidopsis thaliana is the only variant which is capable of a light-dependent decrease of up to 40% and complete recovery to the original Φ_Transfer values. In contrast, Φ_Transfer remains constant during dark adaptation in both mutants. Surprisingly, changes in Φ_Transfer of LHC II preparations were less than 5% only, when substituting violaxanthin by zeaxanthin.     

Synthesis of oligosaccharides corresponding to Vibrio cholerae O139 polysaccharide structures containing dideoxy sugars and a cyclic phosphate

A spacer-equipped tetrasaccharide, p-aminocyclohexylethyl alpha-l-Colp-(1-->2)-beta-d-Galp-(1-->3)-[alpha-l-Colp-(1-->4)]-beta-D-GlcpNAc, containing a 4,6-cyclic phosphate in the galactose residue, has been synthesised. The structure corresponds to a part of the repeating unit of the capsular (and lipo-) polysaccharide of the endemic bacteria Vibrio cholerae type O139 synonym Bengal. The synthetic strategy allows continuous syntheses of the complete O139 hexasaccharide repeating unit as well as of the structurally related repeating unit of serotype O22. Starting from ethyl 2-azido-4,6-O-benzylidene-2-deoxy-1-thio-beta-D-glucopyranoside, a thioglycoside tetrasaccharide donor block was constructed through two orthogonal glycosylations with glycosyl bromide donors. First, a properly protected galactose moiety was introduced using silver triflate as promoter and subsequently the two colitose residues, carrying electron-withdrawing protecting groups for stability reasons, under halide-assisted conditions. The tetrasaccharide block was then linked to the spacer in a NIS-TMSOTf-promoted coupling. Transformation of the azido group into an acetamido group using H2S followed by removal of temporary protecting acetyl groups gave a 4',6'-diol, which was next phosphorylated with methyl dichlorophosphate and deprotected to yield the 4,6-cyclic phosphate tetrasaccharide target structure.     

A Water-Soluble Synthetic Bilirubin with Carboxyl Groups Replaced by Sulfonyl Moieties

 The first symmetrical bilirubin analog with CO₂H groups replaced by SO₃H, 8,12-bis-(2-sulfo-ethyl)-3,17-diethyl-2,7,13,18-tetramethyl-(10H,21H,23H,24H)-bilin-1,19-dione, was synthesized from methyl (2,4-dimethyl-5-ethoxycarbonyl-1H-pyrrol-3-yl) acetate in nine steps via the sulfonic acid analog of xanthobilirubic acid (XBR) and isolated as its disodium salt. The sulfonic acid group was introduced at an early stage of the synthesis by reaction of an intermediate, ethyl 4-(2-bromoethyl)-3,5-dimethyl-1H-pyrrole-2-carboxylate, with sodium sulfite. The disodium bilirubin disulfonate exhibits NMR spectroscopic properties rather similar to those of the parent carboxylic acid, mesobilirubin-XIIIα; however, its UV/Vis spectra are blue-shifted and broadened relative to those of the parent compound. Like mesobilirubin, the disulfonate displays a positive exciton chirality circular dichroism spectrum, albeit with weaker Cotton effects, in a buffered aqueous solution (pH = 7.4) containing a 2:1 molar ratio of human serum albumin.     

High temperature physical adsorption of gases on solids: a comparison of two-dimensional and three-dimensional treatments

Two theories of fluid adsorption are discussed and compared. One starts from the assumption of the existance of a strictly two-dimensional adsorbed phase on the adsorbent surface. The statistical mechanics of this model is solved in the Percus-Yevick approximation for both two dimensional and bulk phases. According to the second, three-dimensional treatment, the thermodynamic functions of adsorption are defined as surface excess functions, relative to the Gibbs dividing surface. Explicit results are given for hard spheres and a Lennard-Jones 6-12 gas in contact with a wall interacting via the Lennard-Jones 3-9 potential. The dependence of excess quantities upon the choice of the Gibbs dividing surface is also discussed.     

Assessing weak intramolecular donor-acceptor interactions using 1H-117Sn J-HMQC spectroscopy

It is demonstrated that long-range nJ(1H,117Sn) coupling constants down to 0.3 Hz, can be accurately quantified from non-linear fitting of the sine modulation of the associated 1H-117Sn correlation cross-peak intensities sampled as a function of the heteronuclear antiphase coherence preparation time in the 1H-117Sn J-HMQC pulse sequence. The contribution of additional, undesired modulations is illustrated and assessed using the product operator formalism, and is traced back to contributions that arise from miss-setting of the wandering 180 degrees pulse angle in the constant time period. The power of the method and its use in the characterization of weak intramolecular donor-acceptor interactions are illustrated by the determination of long-range nJ(1H,117Sn) coupling constants of bis[3-(dimethylamino)propyl]tin derivatives, [Me2N(CH2)3]2SnR2 (', R = Me; 3, R = Ph; 4, R = t-Bu). By comparing these with the values found for the corresponding bis(4-methylpentyl)tin derivatives, [Me2CH(CH2)3]2SnR2 (2', R = Me; 3', R = Ph), which lack such interactions, the use of long-range coupling constants to detect intramolecular donor-acceptor interactions is evaluated. It is concluded that nJ(1H,117Sn) couplings up to six bonds through an organic carbon chain can be quantified, whether donor-acceptor interactions are present or not. Furthermore, evidence is presented that, when two scalar coupling pathways co-exist, the pathway involving an intramolecular donor-acceptor interaction can have opposite sign, thus decreasing the overall coupling constant to a value smaller than that actually measured in the absence of a donor-acceptor interaction, where only one coupling pathway is active. There is nevertheless clear numerical value discrimination in the series of compounds investigated between long-range couplings in derivatives without weak intramolecular donor-acceptor interactions and those where such interactions can exist.