Effect of headgroup on DNA-cationic surfactant interactions

The interaction behavior of DNA with different types of hydroxylated cationic surfactants has been studied. Attention was directed to how the introduction of hydroxyl substituents at the headgroup of the cationic surfactants affects the compaction of DNA. The DNA-cationic surfactant interaction was investigated at different charge ratios by several methods like UV melting, ethidium bromide exclusion, and gel electrophoresis. Studies show that there is a discrete transition in the DNA chain from extended coils (free chain) to a compact form and that this transition does not depend substantially on the architecture of the headgroup. However, the accessibility of DNA to ethidium bromide is preserved to a significantly larger extent for the more hydrophilic surfactants. This was discussed in terms of surfactant packing. Observations are interpreted to reflect that the surfactants with more substituents have a larger headgroup and therefore form smaller micellar aggregates; these higher curvature aggregates lead to a less efficient, "patch-like" coverage of DNA. The more hydrophilic surfactants also presented a significantly lower cytotoxicity, which is important for biotechnological applications.     

Identification of N-linked glycosylation sites in human nephrin using mass spectrometry

Nephrin is a type-1 transmembrane glycoprotein and the first identified principal component of the glomerular filtration barrier. Ten potential asparagine (N)-linked glycosylation sites have been predicted within the ectodomain of nephrin. However, it is not known which of these potential sites are indeed glycosylated and what type of glycans are involved. In this work, we have identified the terminal sugar residues on the ectodomain of human nephrin and utilized a straightforward and reliable mass spectrometry-based approach to selectively identify which of the ten predicted sites are glycosylated. Purified recombinant nephrin was subjected to peptide-N-glycosidase F (PNGase F) to enzymatically remove all the N-linked glycans. Since PNGase F is an amidase, the asparagine residues from which the glycans have been removed are deaminated to aspartic acid residues, resulting in an increase in the peptide mass with 1 mass unit. Following trypsin digestion, deglycosylated tryptic peptides were selectively identified by MALDI-TOF MS and their sequence was confirmed by tandem TOF/TOF. The 1 Da increase in peptide mass for each asparagine-to-aspartic acid conversion, along with preferential cleavage of the amide bond carboxyl-terminal to aspartic acid residues in peptides where the charge is immobilized by an arginine residue, was used as a diagnostic signature to identify the glycosylated peptides. Thus, nine of ten potential glycosylation sites in nephrin were experimentally proven to be modified by N-linked glycosylation.     

C-H arylation of pyridines: high regioselectivity as a consequence of the electronic character of C-H bonds and heteroarene ring

We report a new catalytic protocol for highly selective C-H arylation of pyridines containing common and synthetically versatile electron-withdrawing substituents (NO(2), CN, F and Cl). The new protocol expands the scope of catalytic azine functionalization as the excellent regioselectivity at the 3- and 4-positions well complements the existing methods for C-H arylation and Ir-catalyzed borylation, as well as classical functionalization of pyridines. Another important feature of the new method is its flexibility to adapt to challenging substrates by a simple modification of the carboxylic acid ligand or the use of silver salts. The regioselectivity can be rationalized on the basis of the key electronic effects (repulsion between the nitrogen lone pair and polarized C-Pd bond at C2-/C6-positions and acidity of the C-H bond) in combination with steric effects (sensitivity to bulky substituents).     

Selective excitation of LI2 by chirped laser pulses with all possible interstate radiative couplings

We have numerically explored the feasibility and the mechanism of population transfer to the excited E (1)Σ(g) electronic state of Li(2) from the v=0 level of the ground electronic state X (1)Σ(g) using the A (1)Σ(u) state as an intermediate. In this system, the use of transform limited pulses with a frequency difference greater than the maximum Rabi frequency does not produce population transfer when all possible radiative couplings are taken into account. We have employed two synchronous pulses far detuned from the allowed transition frequencies, mainly with the lower frequency pulse positively chirped, and both pulses coupling the successive pair of states, X-A and A-E. The adiabaticity of the process has been investigated by a generalized Floquet calculation in the basis of 12 field dressed molecular states, and the results have been compared with those obtained from the full solution of time dependent Schro?dinger equation. The conventional representation of the process in terms of three (or four) adiabatic potentials is not valid. It has been found that for cases of almost complete population transfer in full calculations with the conservation of the vibrational quantum number, adiabatic passage is attained with the 12 state Floquet model but not with the six state model. The agreement between the full calculations and the 12 state Floquet calculations is generally good when the transfer is adiabatic. Another characteristic feature of this work is the gaining of control over the vibrational state preparation in the final electronic state by careful tuning of the laser parameters as well as the chirp rate sign. This causes time dependent changes in the adiabatic potentials and nonadiabatic transfers can be made to occur between them.     

Probing the association behavior of poly(ethylene glycol)-based amphiphilic comb-like polymer in NaCl solution

The effect of salt on the associative behavior of intramolecular aggregates obtained from poly(ethylene glycol)-based amphiphilic comb-like polymers in aqueous medium at pH 6.2 has been investigated by surface tension, fluorescence probe, dynamic light-scattering, and viscometry techniques. Results reveal that the addition of salt screens the electrostatic repulsion between the charges along the polymer backbone in the aggregates and consequently (1) reduces the surface activity at the air/water interface, (2) leads to the contraction of the polymer backbone, and (3) reduces the hydrodynamic sizes of the aggregates. In contrast, the hydrophobicity of the aggregates remains unperturbed.     

Conformational study on dipeptides containing phenylalanine: A DFT approach

DFT calculations has been done applying 6-31G^* basis set on a series of dipeptides where the N-terminus position is fixed with phenylalanine and the C-terminus is varied with eight different amino acids. Different geometrical parameters (bond angle, bond length, geometry around -carbon atom) are thoroughly investigated to study the effect of amino acid sequence on dipeptide. Dihedral angle data analysis shows the deviation of amide plane from planarity, which is due to the combined effect of the steric hindrance of –R group and hydrogen bonding. The λ_max value for phenylalanine has been calculated, which shows good agreement with the experimental value. A rigid potential energy scan is performed on phenylalanine by rotating –CH₂Ph, –COOH and –NH₂ groups separately to get some idea about the conformational stability.     

Microporous 3D aluminum MOF doped into chitosan‐based mixed matrix membranes for ethanol/water separation

An aluminum metal–organic framework (Al‐MOF), [Al(OH)(BPDC)] (DUT‐5; BPDC = Biphenyl‐4,4′‐dicarboxylate), was synthesized using solvothermal reactions. The high surface area and micropores (approximately 1.2 nm) of DUT‐5 were characterized using N₂ gas sorption measurements. The thermal stability of DUT‐5 and its phase purity were also investigated. The different amounts of DUT‐5 (0.1, 0.15, and 0.2 wt%) were successfully incorporated into the chitosan (CS) polymer to prepare a mixed matrix membrane (MMM) for the pervaporation of water/ethanol at 25°C. In particular, when 0.15 wt% of DUT‐5 was loaded, the DUT‐5@CS MMMs displayed excellent permeability and selectivity in ethanol/water separation. The results indicated that compared with pristine chitosan membranes, the flux of DUT‐5@CS membranes with 0.15 wt% loading significantly increased from 315 to 378 (g/m² h^?1) and the separation factor from 347 to 3,429. These promising results of the microporous Al‐MOF doped into chitosan MMMs reveal its good application potential for the bio‐ethanol separation processes.     

Rewetting analysis of hot surfaces with internal heat source by the heat balance integral method

A two region conduction-controlled rewetting model of hot vertical surfaces with internal heat generation and boundary heat flux subjected to constant but different heat transfer coefficient in both wet and dry region is solved by the Heat Balance Integral Method (HBIM). The HBIM yields the temperature field and quench front temperature as a function of various model parameters such as Peclet number, Biot number and internal heat source parameter of the hot surface. Further, the critical (dry out) internal heat source parameter is obtained by setting Peclet number equal to zero, which yields the minimum internal heat source parameter to prevent the hot surface from being rewetted. Using this method, it has been possible to derive a unified relationship for a two-dimensional slab and tube with both internal heat generation and boundary heat flux. The solutions are found to be in good agreement with other analytical results reported in literature.