Potential Mechanisms of Photodynamic Inactivation of Virus by Methylene BlueI. RNA–Protein Crosslinks and Other Oxidative Lesions in Qβ Bacteriophage

A spectrum of oxidative lesions was observed in a bacteriophage-based model system that is very sensitive to the photodynamic activity of selected dyes. When suspensions of the intact bacteriophage Qβ were exposed to methylene blue plus light (MB+L), inactivating events, or "hits" occurred that were oxygen-dependent and that were associated with the formation of several specific lesions: (1) carbonyl moieties on proteins, (2) 8-oxo-7,8-dihydroguanine (8-oxoGua), and (3) single-strand breaks (ssb) in the RNA genome and (4) RNA-protein crosslinks. Formation of carbonyl groups associated with protein in the Qβ phage preparation correlated positively with photoinactivation of the phage with increasing doses of either of the sensitizers MB or rose bengal. Strand breaks in the Qβ genomic RNA were observable at high MB concentrations but appeared not to be significant at the lower concentrations of MB, as full-length Qβ RNA was observable well beyond the 99% inactivation point in MB dosage. It was shown that the number of 8-oxoGua lesions were unlikely to be sufficient to account for the number of lethal events. Following exposure to MB+L, crosslink formation between Qβ RNA and protein was observed by virtue of the location of RNA at the interface of phenol-aqueous extractions of phage suspensions. A significant increase over background of RNA-protein complexes (including full-length Qβ RNA) was observed at the lowest concentration of MB tested (0.5 μ M ), which corresponded roughly to an average of 2 lethal hits per phage or approximately 13% survival compared to the zero MB control (100% survival). Due to its close correlation with Qβ inactivation and its expected lethality, RNA-protein crosslink formation may be important as an inactivating lesion in bacteriophage Qβ following MB+L exposure.     

Ion chromatographic analysis of cyanate in gold processing samples containing large concentrations of copper(I) and other metallocyanide complexes

An ion chromatographic (IC) method was developed for the determination of cyanate in gold cyanidation samples containing large concentrations of metallo-cyanide complexes. The analysis was performed on a Waters HC IC-Pak A anion-exchange column with an anthranilic acid eluent, with detection achieved using indirect UV at 355 nm. Two procedures were developed for removal of the metallo-cyanide complexes prior to the IC analysis. The first was a manual off-line method which used solid-phase extraction cartridges containing a strong anion-exchange resin to trap the complexes and to then enable determination of cyanate without interference. In the second approach, an automated on-line method was developed which used an anion-exchange guard column to trap the complexes and a column switching valve to allow backflushing of the cyanate from the guard column. This enabled the total analysis to be performed in a time of 10–14 min, depending on the sample composition. Finally, a comparison of results obtained by the standard Kjeldahl nitrogen method for cyanate and the IC method revealed an interference in the Kjeldahl method for samples containing large concentrations of Cu(I)-cyanide complexes.     

Nucleophile Ringöffnung von α-Nitrocyclopropancarbonsäure-arylestern mit sterisch geschützter,aber elektronisch wirksamer Carbonyl- und Nitro-Gruppe. Ein neues Prinzip der α-Aminosäure-Synthese (2-Aminobutansäure-a4-Synthon)

Nucleophilic Ring Opening of Aryl α-Nitrocyclopropanecarboxylates with Sterically Protected but Electronically Effective Carbonyl and Nitro Group. A New Principle of α-Amino Acid Synthesis (2-Aminobutanoic Acid a⁴-Synthon) The readily available 2,4,6-tri(tert-butyl)-and 2,6-di(tert-butyl)-4-methoxypahenol esters 2 of α-nitrocyclo-propanecarboxaylic acid ring opening with C-, N-, O-, and S-nucleophiles (cyanide, malonate, azide, anilines, alkoxides, phenoxides, thiolates) in DMF or alcohol solvents (80–95% yield). The products 6 – 14 are 2-nitrobutanoates with the newly introduced substituent in the 4-position. Reduction of the NO₂ group with Zn/AcOH/Ac₂O gives N-acetyl-α-amino acid esters 16 – 22 (40–90% yield). Subsequent oxidative cleavage (H₂O₂/HCOOH) of The p-methoxy-phenyl esters 18 and 20 produces free amino acids (65% 23 and 67% 24 , respectively). Thus, the nitro ester 2 corresponds to a 2-aminobutanoic-acid a⁴-synthon, it is a ‘homo-Michael acceptor’ producing γ-substituted α-amino acids.     

The bent RC  N linkage: An AB initio study of NH2CN,NF2CN and PF2CN

The ab initio energies, nuclear and electron repulsions and charge distributions have been calculated using moderately large basis sets as a function of the RC  N angle (R  NH₂, NF₂ or PF₂). The optimum RC  N angles were calculated to be 178.9°, 176.6°, and 175° for NH₂CN, NF₂CN, and PF₂CN, respectively. A rationalization of the differing bends is presented in terms of nuclear-nuclear and electron-electron repulsions.     

Stereospecific synthesis of dienone iron tricarbonyl complexes by friedelcrafts acylation

Acylation of diene Fe(CO)₃ complexes using the Perrier complexes RCOCl/AlCl₃ in methylene chloride at 0°C gives dienone complexes in high yield. Substitution occurs only at unsubstituted terminal carbons of the diene unit. Quenching the reaction mixtures in cold aqueous ammonia gives cis dienone complexes only. Trans dienone complexes are prepared by subsequent isomerization in methanolic sodium methoxide. Formylation of diene Fe(CO)₃ complexes proceeds in modest yield using dichloromethylmethyleter/AlCl₃ in methylene chloride to give trans-dienal complexes. Reduction of the dienone and dienal complexes as well as those of dienols and dienoic esters with 4 : 1 AlCl₃/LiAlH₄ results in complete removal of the oxygen function to give trans-diene complexes in good yield.     

Facilitated transport from ternary cation mixtures through water—chloroform—water membrane systems containing macrocyclic ligands

Cation fluxes were determined for various three-component, equimolar mixtures of alkali metal, alkaline earth, and Pb²⁺ cations in a H₂O---CHCl₃---H₂O liquid membrane system incorporating macrocyclic polyethers as carriers. Carrier ligands studied were 18-crown-6, dicyclohexano-18-crown-6, 1,10-diaza-18-crown-6, 21-crown-7, dibenzo-24-crown-8, and cryptand [2.2.2]. Correlations were found between transport and relative cation:polyether cavity radii, the type of substituents present on the polyether ring, and the type and number of donor atoms present. All the ligands studied transported Pb²⁺ at higher rates than the other Mⁿ⁺ in the mixtures. Transport behavior in these multi-cation systems can be predicted from Mⁿ⁺—polyether complex stability constant data in most cases.     

New synthesis of 2,4-dialkyl(or diaryl)pyrazolo[1,5-a]-1,3,5-triazines

Reactions of monothiodiacylamines or N-aroylthioimidates with 3-aminopyrazoles gave pyrazolo[1,5-a]-1,3,5-triazines in good yields.     

Photodissociation of dimethylnitrosamine

Photodissociation of (CH₃)₂N-NO following S₁(nπ^*) ← S₀ excitation yields (CH₃)₂N^? and NO with a quantum yield of 1.03 ± 0.10. These fragments recombine leaving no stable photopioducts. A fraction of NO produced by photolysis is vibrationally excited. The rate of the NO(v = 1) relaxation in collision with (CH₃)₂N-NO, measured by IR fluorescence, is (1.47 ± 0.03) × 10⁴ s^?1 Torr^?1.     

Accurately solving the electronic Schrodinger equation of small atoms and molecules using explicitly correlated (r12-)MR-CI. VIII. Valence excited states of methylene (CH2)

We compute the adiabatic transition energies of methylene (CH(2)) from the ground state to the lowest electronically excited valence states using the r(12)-MR-ACPF-2 method with a large basis set and an extended reference space. We recall that this method aims at reaching the basis-set and full configuration interaction (CI) limits simultaneously. Our best excitation energies, T(e) (T(0)), are 9.22 (8.87) (a (1)A(1), corrected for relativistic and adiabatic effects), 31.98 (31.86) (b (1)B(1)), and 57.62 (57.18) kcal mol(-1) (c (1)A(1)) (both uncorrected). We are able to reach the respective basis-set limits that closely that the remaining errors of our (uncorrected) calculations are clearly due to the MR-ACPF-2 method. While we are unable to assess the error of the latter method in a systematic way, we still believe that it is rather unlikely that the errors of our excitation energies exceed +/-0.10 kcal mol(-1). We finally observe that our (corrected) a state values deviate by only -0.10 (-0.10) kcal mol(-1) from the results of Csaszar et al. [J. Chem. Phys. 118, 10631 (2003)]--who did careful extrapolations to the valence full-CI and basis-set limits and added a correction for the core correlation--and that the deviation from experiment is only -0.13 (-0.13) kcal mol(-1). From these excellent agreements we conclude that our excitation energies to the b and c states are similarly accurate.