Prerequisites for peptidomic analysis of blood samples: II. Analysis of human plasma after oral glucose challenge -- a proof of concept

Mass spectrometric plasma analysis for biomarker discovery has become an exploratory focus in proteomic research: the challenges of analyzing plasma samples by mass spectrometry have become apparent not only since the human proteome organization (HUPO) has put much emphasis on the human plasma proteome. This work demonstrates fundamental proteomic research to reveal sensitivity and quantification capabilities of our Peptidomics technologies by detecting distinct changes in plasma peptide composition in samples after challenging healthy volunteers with orally administered glucose. Differential Peptide Display (DPD) is a technique for peptidomics studies to compare peptides from distinct biological samples. Mass spectrometry (MS) is used as a qualitative and quantitative analysis tool without previous trypsin digestion or labeling of the samples. Circulating peptides (< 15 kDa) were extracted from 1.3 mL plasma samples and the extracts separated by liquid chromatography into 96 fractions. Each fraction was subjected to MALDI MS, and mass spectra of all fractions were combined resulting in a 2D-display of > 2,000 peptides from each sample. Endogenous peptides that responded to oral glucose challenge were detected by DPD of pre-and post-challenge plasma samples from 16 healthy volunteers and subsequently identified by nESI-qTOF MS. Two of the 15 MS peaks that were significantly modulated by glucose challenge were subsequently identified as insulin and C-peptide. These results were validated by using immunoassays for insulin and C-peptide. This paper serves as a proof of principle for proteomic biomarker discovery down to the pM concentration range by using small amounts of human plasma.     

Synthesis of a Naphthalimide Functionalized Calix[4]arene; A Host Type Fluorophore for Inclusion Compounds in Organic Medium

This article reports the synthesis and the properties of 5,11,17,23-tetra(t-butyl)-25,27-bis-(ethoxy-1,8-naphthalimide)-26,28-hidroxy-calix[4]arene and the formation of an inclusion compound in organic medium. This functionalized calix[4]arene was conceived as the association of a potential host species with a good fluorophore for optical sensoring purposes. Calix[4]-NI as we will call it, maintains its ‘cone-pinched’ configuration and exhibits typical naphthalimide fluorescence bands in non-polar solvents. Its ability to interact with guest species via hydrogen bonding in its endo-hydrophilic cavity to form inclusion compounds was verified with absorption and fluorescence measurements using N-ethanol-1,8-naphthalimide as guest species, which was projected to fit exactly the host cavity and to interact with its naphthalimide π electrons. For this reason, it was possible to follow the formation of the inclusion compound with electronic spectroscopy.     

Experimental analysis and modified rotor description of the infrared fundamental band of HCl in Ar, Kr, and Xe solutions

We report an experimental study of the rotovibrational fundamental PQR-band shapes in the IR absorption spectra of HCl dissolved in condensed rare gases in a wide range of temperatures. The effective vibrational frequencies are determined from analysis of the fine rotational structure partially resolved in the band wings. The central Q-branch components appear redshifted with respect to the effective vibrational frequencies, their shifts in different solvents found to match the HCl stretching mode shifts in binary Rg...HCl van der Waals heterodimers. Theoretical quasi-free rotor and modified rotor models are applied to describe evolution of the band profiles at changing thermodynamic conditions. Both models are shown to reproduce equally well the observed spectral density distributions in the band wings. However, the modified rotor formalism that accounts for depopulation of the lower-energy rotational solute states provides better agreement with the experiment in the range of the P- and R-branch maxima. We surmise that the Q branches separated from the measured spectral profiles are formed by transitions between rotationally hindered states of diatomic molecules coupled to the solvent by the local anisotropy of the interaction potential.     

Calculation of Kinetic Parameters for Crystallization Processes

In this work, kinetic data of crystallization processes have been determined by measurement of the intensities of reflection of X-ray diffraction spectra and modeled using the Avrami-Eroféev and Jander expressions. We have created a simple Microsoft Excel spreadsheet that allows students to calculate the kinetic data. Students will be able to calculate the kinetic parameters of any crystallization process, for example, hydrothermal crystallization of catalytic materials like zeolites. The possibility of using the spreadsheet with different models or expressions and discriminating among them is also validated by comparing the model results with experimental data (differential thermal analyses, DTA) from papers available in the recent literature.     

Determination of polycyclic aromatic hydrocarbons in seawater by high-performance liquid chromatography with fluorescence detection following micelle-mediated preconcentration

In this work, the nonionic surfactant polyoxyethylene-10-lauryl ether has been used for the extraction and preconcentration of 14 polycyclic aromatic hydrocarbons, classified as priority pollutants by the US Environmental Protection Agency, from seawater samples. The cloud-point preconcentration previous separation by HPLC and quantification using fluorimetric detection and wavelength programming allow to determine these pollutants with detection limits ranging from 1.0 to 1.5 x 10(2) ng/l with RSDs better than 10.4%. The methodology is evaluated using well-established extraction and preconcentration methods and GC-MS.     

Swelling and dissolution of latex dispersions of the ethyl acrylate-methacrylic acid copolymers during alkalization

By using non-Newtonian viscometry and the static light-scattering method, changes in the structure of particles of latex dispersions of ethyl acrylate-methacrylic acid copolymer during alkalization with ammonium hydroxide were investigated. It was found that in dispersions with an acid content up to 20 wt% the particles only swell; at acid content between 20 and 40 wt% they decompose to smaller units represented by supermolecular aggregates of macromolecules, and only when approximately starting from 40 wt% of acid does the copolymer become molecularly dissolved. This means that even if dispersions with an acid content from c. 20 wt% are clarified by alkalization, no complete dissolution takes place.     

The determination of chromium, copper and nickel in groundwater using axial plasma inductively coupled plasma atomic emission spectrometry and proportional correction matrix effect reduction

The performance of a proportional correction matrix effect reduction procedure was investigated for an axially viewed inductively coupled plasma. It was shown that the proportional correction factor (ratio of analyte matrix effect and internal standard matrix effect) was sufficiently stable over the investigated matrix element concentration ranges (0–2000 mg/L of Na and 0–400 mg/L of Ca) for the procedure to be successful. Proportional correction results in the best correction for matrix effects compared to the classical 1?:?1 intensity ratio correction procedure or the approach without any correction, as was shown in recovery experiments using analyte spiked groundwater samples. Matrix effects as high as 18% without correction were reduced to less than 4% applying proportional correction.     

Electron attachment and vibrational excitation in hydrogen iodide: calculations based on the nonlocal resonance model

High resolution laser spectroscopy has been applied to study the hyperfine structure of excited energy levels of Thulium I. As part of our aim to complete the fine and hyperfine structure of the Tm I spectra 51 transitions in the visible were measured and precise values for the magnetic dipole hyperfine structure constants A of 24 odd and 19 even levels were determined. In addition, a new energy level of even parity with J = 3/2 is found at 27 509.40 (5)cm^?1 using laser induced fluorescence spectroscopy.     

Copper(II)–Ammonia Complexation Equilibria in Aqueous Solutions at Temperatures from 30 to 250°C by Visible Spectroscopy

The spectra of copper(II)–ammonia solutions in 2 mol-kg^–1 NH₄NO₃(aq) were recorded as a function of pH with a new UV–visible flow cell, capable of operating at conditions up to 325°C and 300 bars. Equilibrium constants for the formation of copper(II)–ammonia complexes Cu(NH₃)_n ²⁺, 1 n 4, from 30 to 150°C were determined by evolving factor analysis and nonlinear least-squares regression. Measurements at higher temperatures were limited by thermal decomposition of NH₄NO₃(aq). The formation constants of Cu(NH₃)_n ²⁺ decrease with temperature, consistent with extrapolations of literature data from measurements below 100°C. Measurements above 150°C were carried out in 0.5 mol-kg^–1 CF₃SO₃H (aq), at the very high ammonia concentrations required to avoid the precipitation of CuO(s). The spectra are consistent with Cu(NH₃)₄ ²⁺ as the predominant species, based on extrapolations of peak maxima and molar absorptivities from lower temperatures. Shifts in the spectra of Cu²⁺ and the Cu(NH₃)_n ²⁺ species to higher wavelength and increases in molar absorbance with increasing temperature are discussed in terms of the structure of the complexes.     

Micellar enhanced ultrafiltration of cadmium

The preconcentration of cadmium from aqueous colloid solution containing 8-hydroxyquinoline as extractant, laurylsulphate natrium as surfactant,n-butanol as co-surfactant was performed using micellar ultrafiltration technique. Filters with different pore size and materials were used to achieve a separation from liquid solutions. The cadmium recoveries depending on different conditions (pH, concentration of surfactant) were determined and the results are explained in the terms of colloidal parameters in the compare with the classical solvent extraction.