High-throughput binding characterization of RNA aptamer selections using a microplate-based multiplex microcolumn device

We describe a versatile 96-well microplate-based device that utilizes affinity microcolumn chromatography to complement downstream plate-based processing in aptamer selections. This device is reconfigurable and is able to operate in serial and/or parallel mode with up to 96 microcolumns. We demonstrate the utility of this device by simultaneously performing characterizations of target binding using five RNA aptamers and a random library. This was accomplished through 96 total selection tests. Three sets of selections tested the effects of target concentration on aptamer binding compared to the random RNA library using aptamers to the proteins green fluorescent protein (GFP), human heat shock factor 1 (hHSF1), and negative elongation factor E (NELF-E). For all three targets, we found significant effects consistent with steric hindrance with optimum enrichments at predictable target concentrations. In a fourth selection set, we tested the partitioning efficiency and binding specificity of our three proteins’ aptamers, as well as two suspected background binding sequences, to eight targets running serially. The targets included an empty microcolumn, three affinity resins, three specific proteins, and a non-specific protein control. The aptamers showed significant enrichments only on their intended targets. Specifically, the hHSF1 and NELF-E aptamers enriched over 200-fold on their protein targets, and the GFP aptamer enriched 750-fold. By utilizing our device’s plate-based format with other complementary plate-based systems for all downstream biochemical processes and analysis, high-throughput selections, characterizations, and optimization were performed to significantly reduce the time and cost for completing large-scale aptamer selections.

Coadsorption of sodium dodecyl sulfate and a polyanion onto poly(ethylenimine) in multilayered thin films

Mixed surfactant-polyelectrolyte multilayer films were fabricated by both ionic self-assembly and spin assembly. A polycation [PEI = poly(ethylenimine)] was deposited from a dilute solution, while a polyanion (PAZO = poly[1-[4-(3-carboxy-4-hydroxyphenylazo) benzenesulfonamido]-1,2-ethanediyl, sodium salt]) was deposited from a mixture containing a fixed concentration of polyanion and various concentrations of the anionic surfactant sodium dodecyl sulfate (SDS). Coadsorption of SDS and PAZO onto PEI layers was observed using both deposition methods and attributed to strong PEI-SDS interactions and entropic factors. Increasing the concentration of SDS resulted in films containing progressively less adsorbed PAZO. No further reduction in the amount of adsorbed PAZO was observed above the SDS critical micelle concentration. We attribute the film growth behavior to a fast adsorption of SDS onto PEI, followed by a slower adsorption of PAZO onto the remaining unoccupied binding sites. We observe that SDS interpenetrates throughout the PAZO and PEI layers, increasing the surface hydrophobicity of both. We observed similar behavior for both ionically self-assembled and spin-assembled systems.     

Synthesis and chemistry of unusual bicyclic endoperoxides containing the pyridazine ring

Inverse-Diels-Alder reaction of dimethyl 1,2,4,5-tetrazine-3,6-dicarboxylate with unsaturated bicyclic endoperoxides gave the bicyclic endoperoxides containing the pyridazine ring. The NEt(3) and CoTPP (TPP = tetraphenylporphyrin) catalyzed reaction of endoperoxide 8 resulted in the formation of hydroxy ketone 11 and cis-diol 9. Cleavage of the peroxide linkage in 8 with thiourea provided cis-diol 9. Oxidation of hydroxy ketone 11 and cis-diol 9 led to the phthalazine-5,8-dione 10. Furthermore, the various transformations of the other endoperoxides 19, 20, 22, 23, and 30 resulted in the formation of pyridazine derivatives.     

Liquid phase oxidation of benzyl alcohol to benzaldehyde over chromium borophosphate catalyst synthesized by solution combustion method using different types of fuel

In this paper, chromium borophosphates have been prepared by the solution combustion method using different types of fuel and enhanced as a catalyst for liquid-phase oxidation of benzyl alcohol to benzaldehyde for the first time. Carbohydrazide, citric acid, hexamethylenetetramine, oxalyldihydrazide and urea used as an organic fuel and the obtained chromium borophosphates were systematically characterized by infrared spectroscopy, X-ray powder diffraction, thermogravimetry, scanning electron microscopy, and surface analysis techniques. They are structurally identical and thermally stable up to 1000 °C. According to fuel, their surface properties differ from each other and the long and short rod-like particles, which have a surface area between 7 and 19 m² g^?1, are formed. The effects of solvent type, reaction temperature, reaction time, peroxide amount and catalyst amount were also examined for catalytic studies, and the reaction conditions were optimized. As compared with the other fuels, hexamethylenetetramine-assisted synthesized chromium borophosphate catalyst provides high benzaldehyde conversion (52.09%) and selectivity (100%) under the optimized condition and has potential as a heterogeneous catalyst for oxidation reactions.

     

Ionizing radiation and its effects on pharmaceuticals

Journal of Radioanalytical and Nuclear Chemistry - In this work, a total of twenty samples selected for investigation originate from South Africa and Namibia uranium mines. The aim of this study...     

A comparative analysis of Mindlin and Kirchhoff bending solutions for nonlinearly tapered annular plate with free edges

In this study, we consider the problem of nonlinearly tapered annular plate with a free edge. The supported edge may be simply supported, clamped or elastically restrained against rotation. Exact expressions of deflection, moment-resultants, and stresses are presented for nonuniform thickness. We compare the results of the Kirchhoff plate theory and the Mindlin plate theory. It is shown that the Kirchhoff plate theory and the Mindlin plate theory provide approximately the same results for the positive values of the thickness factor, but the difference between the deflections diverges as the thickness increases at the inner edge. We also propose that the Kirchhoff plate theory may be used in the region of −0.4 ≤ α < 1 and the Mindlin plate theory must be used for α < −0.4.     

Equilibrium studies on chromium(III) complexes of salicylic acid and salicylic acid derivatives in aqueous solution

The complexes of chromium(III) ion formed by salicylic acid, SA(H(2)L), and its derivatives (H(2)L): 5-nitrosalicylic acid (5-NSA), 5-sulphosalicylic acid (5-SSA) were investigated by means of potentiometry and spectroscopy, at 25 degrees C and in ionic strength of 0.1 M KNO(3) and 0.1 M KCl, respectively. Over the acidic pH range, the coordination of Cr(III) ion to SA and its derivatives in 1 : 1 mole ratio occurs, CrL(+) type complex is formed. In the excess of ligand, the coordination of the second ligand molecule is somewhat hindered; as a result CrL(HL) type complex occurs. Their existences were verified and their formation constants were determined. At near neutral pH, CrL(OH) and CrL(HL)(OH)(-) type hydroxo complexes formed by hydrolytic equilibria and their formation constants were also defined. The stabilities of Cr(III) complexes of SA and its derivatives decrease in the following order: SA>5-SSA>5-NSA. The formation constants of Cr(III) complexes of SA and its derivatives are in comparable ranges with the corresponding complexes of the 2,x-dihydroxybenzoic acid (2,x-DHBA) of Cr(III) ion. The stabilities of SA complexes for V(IV), Cr(III) and Fe(III) ions that have similar ionic radii, increase in the order VOL相似文献   

Synthesis, characterization, and electrical, electrochemical and gas sensing properties of a novel ball-type four t-butylcalix[4]arene bridged binuclear zinc(II) phthalocyanine

1,3 dimethoxy-4-t-butylcalix[4]arene has been used to synthesize a novel ball-type dimeric zinc(II) phthalocyanine, [Zn2Pc2(tbca)4] that exhibits mixed-valence behaviour and non-Arrhenius type dependence of conductivity.     

Synthesis and characterization, novel across adjacent ring formed phthalocyanine

Novel mononuclear Zn(ii) 4, Co(ii) 5 and Cu(ii) 6 metallophthalocyanines have been synthesized from 4,4'(ethane-1,1-p-phenol-2,2-p-phenoxy)phthalonitrile 3, which can be obtained by the reaction of 4-nitrophthalonitrile 1 with 1,1,2,2-tetrakis(p-hydroxy-phenyl)-ethane 2. The target water-soluble derivatives of 7-9 were acquired from a boiling suspension of the compounds in aqueous 20% KOH solution. The synthesized complexes have been characterized by UV-vis, IR, (1)H NMR and MALDI-TOF-mass spectroscopies. In addition, the geometric and electronic structures of 2-6 were investigated by ab initio/DFT quantum mechanical calculations using the Gaussian 03 program with HF theory at the B3LYP/3-21G level. The redox properties of the complexes 4-6 were examined by cyclic voltammetry on platinum in DMSO/TBAP. These complexes displayed one-electron metallophthalocyanine-based and multi-electron hydroxyphenyl-based redox processes. The effect of temperature on the d.c. conductivity and impedance spectra of spin coated films of compounds were investigated at the temperatures between 300-452 K and in the frequency range of 40-105 Hz. Thermally activated conductivity dependence on temperature was observed for all compounds. A.c. results indicated that conduction mechanism can be explained by classical hopping barriers mechanism for all films.