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901.
Chemical Synthesis of Proteins with Non‐Strategically Placed Cysteines Using Selenazolidine and Selective Deselenization 下载免费PDF全文
Dr. Post Sai Reddy Shahar Dery Dr. Norman Metanis 《Angewandte Chemie (International ed. in English)》2016,55(3):992-995
Although native chemical ligation has enabled the synthesis of hundreds of proteins, not all proteins are accessible through typical ligation conditions. The challenging protein, 125‐residue human phosphohistidine phosphatase 1 (PHPT1), has three cysteines near the C‐terminus, which are not strategically placed for ligation. Herein, we report the first sequential native chemical ligation/deselenization reaction. PHPT1 was prepared from three unprotected peptide segments using two ligation reactions at cysteine and alanine junctions. Selenazolidine was utilized as a masked precursor for N‐terminal selenocysteine in the middle segment, and, following ligation, deselenization provided the native alanine residue. This approach was used to synthesize both the wild‐type PHPT1 and an analogue in which the active‐site histidine was substituted with the unnatural and isosteric amino acid β‐thienyl‐l ‐alanine. The activity of both proteins was studied and compared, providing insights into the enzyme active site. 相似文献
902.
Casey FP Davey NE Baran I Varekova RS Shields DC 《Journal of chemical information and modeling》2008,48(7):1524-1529
Protein-protein interactions are fundamental in mediating biological processes including metabolism, cell growth, and signaling. To be able to selectively inhibit or induce protein activity or complex formation is a key feature in controlling disease. For those situations in which protein-protein interactions derive substantial affinity from short linear peptide sequences, or motifs, we can develop search algorithms for peptidomimetic compounds that resemble the short peptide's structure but are not compromised by poor pharmacological properties. SAAMCO is a Web service ( http://bioware.ucd.ie/ approximately saamco) that facilitates the screening of motifs with known structures against bioactive compound databases. It is built on an algorithm that defines compound similarity based on the presence of appropriate amino acid side chain fragments and a favorable Root Mean Squared Deviation (RMSD) between compound and motif structure. The methodology is efficient as the available compound databases are preprocessed and fast regular expression searches filter potential matches before time-intensive 3D superposition is performed. The required input information is minimal, and the compound databases have been selected to maximize the availability of information on biological activity. "Hits" are accompanied with a visualization window and links to source database entries. Motif matching can be defined on partial or full similarity which will increase or reduce respectively the number of potential mimetic compounds. The Web server provides the functionality for rapid screening of known or putative interaction motifs against prepared compound libraries using a novel search algorithm. The tabulated results can be analyzed by linking to appropriate databases and by visualization. 相似文献
903.
Norman L. Johnson Giuseppe Marino Olga Polverino Rocco Trombetti 《Finite Fields and Their Applications》2008,14(2):456-469
In [G. Marino, O. Polverino, R. Trombetti, On -linear sets of PG(3,q3) and semifields, J. Combin. Theory Ser. A 114 (5) (2007) 769–788] it has been proven that there exist six non-isotopic families (i=0,…,5) of semifields of order q6 with left nucleus and center , according to the different geometric configurations of the associated -linear sets. In this paper we first prove that any semifield of order q6 with left nucleus , right and middle nuclei and center is isotopic to a cyclic semifield. Then, we focus on the family by proving that it can be partitioned into three further non-isotopic families: , , and we show that any semifield of order q6 with left nucleus , right and middle nuclei and center belongs to the family . 相似文献
904.
Tao SL Popat KC Norman JJ Desai TA 《Langmuir : the ACS journal of surfaces and colloids》2008,24(6):2631-2636
SU-8 is a chemically amplified, epoxy-based negative photoresist typically used for producing ultrathick resist layers during device manufacturing in the semiconductor industry. As a simple resist, SU-8 has garnered attention as a possible material for a variety of biomedical applications, including tissue engineering, drug delivery, as well as cell-based screening and sensing. However, as a hydrophobic material, the use of SU-8 is limited due to a high degree of nonspecific adsorption of biomolecules, as well as limited cell attachment. In this work, surface chemistry is utilized to modify the SU-8 surface by covalently attaching poly(ethylene glycol) (PEG) to increase biofunctionality and improve its nonfouling properties. Different molecular weights and concentrations of PEG were used to form films of various grafting densities on SU-8 surfaces. X-ray photoelectron spectroscopy (XPS) was used to verify the presence of PEG moieties on the SU-8 surface. High-resolution C1s spectra show that, with an increase in concentration and immobilization time, the grafting density of PEG also increases. Further, a standard overlayer model was used to calculate the thickness of the PEG films formed. The effect of PEG-modified SU-8 was examined in terms of protein adsorption on the surface and fibroblast-surface interactions. 相似文献
905.
Nettesheim F Liberatore MW Hodgdon TK Wagner NJ Kaler EW Vethamuthu M 《Langmuir : the ACS journal of surfaces and colloids》2008,24(15):7718-7726
The addition of positively charged, 30 nm diameter silica nanoparticles to cationic wormlike micellar solutions of cetyltrimethylammonium bromide and sodium nitrate is studied using a combination of rheology, small angle neutron scattering, dynamic light scattering, and cryo-transmission electron microscopy. The mixtures are single phase up to particle volume fractions of 1%. The addition of like-charged particles significantly increases the wormlike micelle (WLM) solution's zero shear rate viscosity, longest relaxation time, and storage modulus. The changes are hypothesized to originate from a close association of the particles with the micellar mesh. Small angle neutron scattering measurements with contrast matching demonstrate associations between particles mitigated by the WLMs. The effective interparticle interactions measured by SANS can explain the observed phase behavior. Dynamic light scattering measurements confirm the dynamic coupling of the particles to the micellar mesh. 相似文献
906.
In-line solid-phase extraction (SPE) for capillary electrophoresis (CE) was investigated using a synthesized monolith and a commercial packing material. Terbutaline (TER) and 4-hydroxy-3-methoxy-methamphetamine (HMMA) with benzyl alcohol as the electroosmotic flow marker were employed as model compounds. Two types of methacrylate-based monoliths, namely methacrylic acid-ethylene dimethacrylate and butylmethacrylate-ethylene dimethacrylate were examined. Preliminary results indicated that a non-aqueous separating medium is more suitable for these methacrylate monoliths than a purely aqueous medium (non-reproducible elution). However, coupling of the methacrylic acid-ethylene dimethacrylate with non-aqueous capillary electrophoresis could not provide good precision for the three model compounds. A packed-silica C18 SPE was also adopted by simply packing the C18 particles in situ in the separation capillary. Using an aqueous running buffer (10 mM phosphate buffer (PPB), pH 7), acceptable precision could be obtained with this type of SPE material. With a 10 min loading time and 20 min total analysis time, the pre-concentration factors were 333 and 1000 for TER and HMMA, respectively. The %RSD were less than 4.5 and 0.3 for the peak areas and migration times, respectively, for both HMMA and TER (n=20). 相似文献
907.
This work reports the first use of a monolith with method development for the separation of tocopherol (TOH) compounds by CEC with UV detection. A pentaerythritol diacrylate monostearate-ethylene dimethacrylate (PEDAS-EDMA) monolithic column has been investigated for an optimised condition to separate alpha-, beta-, gamma- and delta-TOHs, and alpha-tocopherol acetate (TAc). The PEDAS-EDMA monolith showed a remarkably good selectivity for separation of the TOH isomers including the beta- and gamma-isomers which are not easily separated by standard C8 or C18 particle-packed columns. Retention studies indicated that an RP mechanism was involved in the separation on the PEDAS-EDMA column, but polar interactions with the underlying ester and hydroxyl groups enhanced the separation of the problematic beta- and gamma-isomers. Separation of all the compounds was achieved within 25 min using 3:10:87 v/v/v 100 mM Tris buffer (pH 9.3)/methanol/ACN as the mobile phase. The method was successfully applied to a pharmaceutical sample with recoveries from 93 to 99%. Intraday and interday precisions (%RSD) for peak area and retention time were less than 2.3. LODs for all four TOHs and TAc were below 1 ppm. 相似文献
908.
A formulation and implementation of the quadratic response function in the adiabatic four-component Kohn-Sham approximation is presented. The noninteracting reference state is time-reversal symmetric and formed from Kramers pair spinors, and the energy density is gradient corrected. Example calculations are presented for the optical properties of disubstituted halobenzenes in their meta and ortho conformations. It is demonstrated that correlation and relativistic effects are not additive, and it is shown that relativity alone reduces the mubeta-response signal by 62% and 75% for meta- and ortho-bromobenzene, respectively, and enhances the same response by 17% and 21% for meta- and ortho-iodobenzene, respectively. Of the employed functionals, CAM-B3LYP shows the best performance and gives hyperpolarizabilities beta distinctly different from B3LYP. 相似文献
909.
Wojcik R Swearingen KE Dickerson JA Turner EH Ramsay LM Dovichi NJ 《Journal of chromatography. A》2008,1194(2):243-248
3-(2-Furoyl)quinoline-2-carboxaldehyde (FQ), Chromeo P465, and Chromeo P503 are weakly fluorescent reagents that react with primary amines to produce fluorescent products. We studied the reaction of these reagents with alpha-lactalbumin by mass spectrometry. The reaction generated a set of products by the addition of one or more labels to the protein. At room temperature, the reaction was an order of magnitude faster with the Chromeo reagents than with FQ; however, the steady-state labeling efficiency was a factor of two higher for FQ compared with the Chromeo reagents. The relative abundance of the products with FQ usually followed a binomial distribution, which suggests that the labeling sites were uniformly accessible to this reagent. In contrast, the distribution of reaction products with the Chromeo reagents did not follow a binomial distribution for reactions performed in the absence of sodium dodecyl sulfate (SDS); it appears that the protein labeled with the Chromeo reagents refolded into a relatively stable secondary structure that hid some reactive sites. The reaction with the Chromeo reagent did follow the binomial distribution if the protein underwent treatment with 1% SDS at 95 degrees C for 5 min, which apparently disrupts the protein's secondary structure and allowed uniform access to all labeling sites. Chromeo 503 labeled seven of the 13 primary amines in denatured alpha-lactalbumin. 相似文献
910.
Two highly fluorinated bipyridine derivatives, (4,4′‐bis(RfCH2OCH2)‐2,2′‐bpy) {Rf = n‐C10F21 ( 1a ), n‐C10F23 ( 1b )}, have been synthesized starting from 4,4′‐bis(BrCH2)‐2,2′‐bpy and the corresponding fluorinated alkoxides. The fluorine contents of ligands 1a‐b are 62.3% and 63.3%, respectively, both being white solids, virtually insoluble in CH2Cl2 or DMF and highly fluorophilic with a partition ratio between DMF and n‐C8F18 less than 1:1000. The reaction of ligands 1a‐b with [Pd(CH3CN)2Cl2] results in novel Pd complexes [PdCl2(4,4′‐bis‐(RfCH2OCH2)‐2,2′‐bpy)] where Rf = n‐C10F21 ( 2a ), n‐C10F23 ( 2b ), respectively. The Pd complexes 2a‐b are pale yellow solids, soluble only in fluorinated solvents. The Pd complexes 2a‐b have been satisfactorily tested for Mizoroki‐Heck arylation under fluorous biphasic catalysis conditions in that the Pd complexes 2a‐b are easily recovered and maintain good catalytic activity after 8 consecutive cycles (> 90% yield). The TGA studies indicate that the Pd complexes 2a‐b are thermally stable up to 300 °C. 相似文献