Fluorescent trimethyl-substituted naphthyridine as a ligand for C-C mismatch detection in CCG trinucleotide repeats

We report on the selective binding of 2-amino-5,6,7-trimethyl-1,8-naphthyridine (ATMND) to C-C mismatch present in the hairpin structures of (CCG)(n) trinucleotide repeats that are associated with neurological diseases; this binding is accompanied by significant fluorescence quenching of ATMND.     

Electrochemical SNPs detection using an abasic site-containing DNA on a gold electrode

An abasic site-containing DNA combined with lumiflavin allows amperometric determination of single nucleotide polymorphism through hydrogen bond-mediated nucleobase recognition in water by using abasic sites as a molecular recognition field.     

Mechanism of crystallization of enzyme protein thermolysin

The mechanism of crystallization of enzyme protein thermolysin was investigated. The size distribution of thermolysin precipitates was measured by dynamic light scattering during precipitation, and the surface and cross section of the finally obtained precipitate were observed by scanning electron microscopy. The thermolysin precipitates obtained at the initial supersaturation ratio of 8.9 to 164 and pH 7.0 were hexagonal rods having an average size of 9.2×1.5 μm, and were composed of a number of small particles of 15 to 200 nm in diameter. The average size of the small particles was 60 nm in diameter, and the formation of the particles was found to be completed in the early stage of precipitation. Observation of the finally recovered thermolysin precipitate by polarizing microscopy revealed that the precipitate is a crystalline solid. From these data, a possible mechanism of thermolysin crystallization was proposed. The crystallization proceeds through two steps: the first step is the formation of primary particles, and the second step is crystal growth by highly ordered aggregation of the primary particles.     

Permeation flux of organic molecules through silica-surfactant nanochannels in a porous alumina membrane.

The permeation fluxes of phenol, benzene sulfonate (BS) and benzene disulfonate (BDS) through a porous anodic alumina membrane with the perpendicularly oriented silica-surfactant nanochannel assembly membrane (NAM) were measured in water-ethanol mixture media. The permeation flux depended on solute charges and on solvent composition. As the ethanol ratio increased, the fluxes of BS and BDS increased and the flux of phenol decreased. The results of extraction/elution experiments also depended on the solute charges and the solvent composition. Chromatographic experiments in n-hexane showed that dipole and hydrophobic interactions affect the retention of solutes. Permeation of the solute across the NAM in water-ethanol mixture is likely to be determined by various factors such as dipole interaction, hydrophobic interaction, solvation, and anion-exchange efficiencies.     

Deformation and molecular orientation in films of metallocene polypropylene,ethylene–butylene rubber,and their 80/20 (w/w) blend revealed by the simultaneous kinetic measurement of microscopic infrared dichroism,macroscopic stress,and mesoscale strain

Simultaneous kinetic measurement of microscopic infrared dichroism, macroscopic stress, and mesoscale strain was used to study the deformation mechanisms of metallocene polypropylene (MPP), ethylene–butylene rubber (EBR), and their blend (MPP/EBR = 80/20 w/w). As with pure MPP, the molecular orientation in the blend is dominated by the necking of the isotactic polypropylene matrix. During the necking passage through the mesoscale sampling area, the molecular orientation of the polypropylene matrix in the blend is smaller than that in the pure polypropylene film at the same level of mesoscale strain. However, the orientation of the EBR dispersed phase in the blend is larger than that in the pure EBR film. This may result from the partial miscibility of the two ingredients in the amorphous phases and their resultant strong interfacial interaction. The large stress supported by the MPP matrix extends to the island of the EBR domain and leads to its large deformation. © 2005 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 43: 1520–1531, 2005     

Scanning near-field optical/atomic force microscopy for fluorescence imaging and spectroscopy of biomaterials in air and liquid: Observation of recombinantEscherichia coli with gene coding to green fluorescent protein

We have developed a system of scanning near-field optical/atomic force microscopy (SNOM/AFM) for fluorescence imaging and spectroscopy of biomaterials in air and liquid. SNOM/AFM uses a bent optical fiber simultaneously as a dynamic force AFM cantilever and a SNOM probe. Optical resolution of SNOM images shows about 50 nm in an illumination mode for a standard sample of a patterned chromium layer of 20 nm thickness on a quartz glass plate. The SNOM/AFM system contains a photon counting system and polychrometer/ICCD (intensified charge coupled device) system for observation of the fluorescence image and spectrograph of micro areas, respectively. The gene coding to green fluorescence protein (GFP) was cloned in recombinantEscherichia coli (E. coli). Topography, fluorescence image and spectrograph of recombinantE. coli by SNOM/AFM showed a difference in fluorescence in individualE. coli. Fluorescence activity of GFP can thus be used as a convenient indicator of transformation. SNOM/AFM is also applicable to observe immobilizedE. coli on a glass plate in water with a liquid chamber and may allow the viewing of observation of floating organisms.     

In-situ measurement of photochemical changes of solid samples by fourier transform infrared photoacoustic spectroscopy

Infrared spectral changes of lithographic printing plates were measuredin-situ by PAS and RAS. The advantages of PAS over RAS were discussed for the spectral measurements of organic coatings on roughened metal surface.