Basicity and structure of 5-hydroxybenzimidazoles in nitromethane

Examination of the acid-base properties of 5-hydroxybenzimidazoles has shown them to exist in nitromethane as the 5-hydroxy-tautomers. Substituents in the 2-position have a predominantly inductive effect on the basicity of the 3-nitrogen, rationalized as in other nitrogen heterocycles by the proximity of the substituents to the reaction center.N. N. Semenov Institute of Chemical Physics, Russian Academy of Sciences, 117977 Moscow. The Research Institute for Intermediates and Dyes, 103787 Moscow. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 2, pp. 421–425, February, 1992.     

Ligand-protein docking using a quantum stochastic tunneling optimization method

A novel hybrid optimization method called quantum stochastic tunneling has been recently introduced. Here, we report its implementation within a new docking program called EasyDock and a validation with the CCDC/Astex data set of ligand-protein complexes using the PLP score to represent the ligand-protein potential energy surface and ScreenScore to score the ligand-protein binding energies. When taking the top energy-ranked ligand binding mode pose, we were able to predict the correct crystallographic ligand binding mode in up to 75% of the cases. By using this novel optimization method run times for typical docking simulations are significantly shortened.     

1H and 13C NMR spectra,isomers, and imine-enamine tautomers of N-(1,2,5-trimethyl-4-piperidylidene)aniline

The product of condensing 1,2,5-trimethylpiperidin-4-one with aniline has been investigated by NMR spectroscopy. Three isomers of N-(1,2,5-trimethyl-4-piperidylidene)aniline have been identified differing in the configuration of the methyl groups at C₂ and C₅ of the piperidine ring and the Z,E isomerism about the C=N bond. Traces of the enamine tautomeric form of the imine were also detected. , , and spin-spin couplings were used to determine the structural configuration of the isomers.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 10, pp. 1405–1408, October, 1989.     

Structural characterisation of tyrosine-nitrated peptides by ultraviolet and infrared matrix-assisted laser desorption/ionisation Fourier transform ion cyclotron resonance mass spectrometry

Nitration of tyrosine residues in proteins may occur in cells upon oxidative stress and inflammation processes mediated through generation of reactive nitroxyl from peroxynitrite. Tyrosine nitration from oxidative pathways may generate cytotoxic species that cause protein dysfunction and pathogenesis. A number of protein nitrations in vivo have been reported and some specific Tyrosine nitration sites have been recently identified using mass spectrometric methods. High-resolution Fourier transform ion cyclotron resonance mass spectrometry (MALDI) FT-ICR-MS) is shown here to be a highly efficient method in the determination of protein nitrations. Following the identification of nitration of the catalytic site Tyr-430 residue of bovine prostacyclin synthase, we synthesised several model peptides containing both unmodified tyrosine and 3-nitro-tyrosine residues, using solid-phase peptide synthesis (SPPS). The structures of the nitrotyrosine peptides were characterised both by ESI- and by matrix-assisted laser desorption/ionisation (MALDI)-FT-ICR-MS, using a standard ultraviolet (UV) nitrogen nitrogen laser and a 2.97 microm Nd-YAG infrared laser. Using UV-MALDI-MS, 3-nitrotyrosyl-peptides were found to undergo extensive photochemical fragmentation at the nitrophenyl group, which may hamper or prevent the unequivocal identification of Tyr-nitrations in cellular proteins. In contrast, infrared-MALDI-FT-ICR-MS did not produce fragmentation of molecular ions of Tyr-nitrated peptides.     

Solid-phase synthesis of N-labeled acylpentamines as reference compounds for the MS/MS investigation of spider toxins

A solid-phase route for synthesis of ¹⁵N-labeled acylpolyamines is described. Utilizing alkylation at benzylic N-atom as a key step, ¹⁵N-atoms are incorporated by stepwise construction of the polyamine framework on the solid support. The derivatives were used as reference compounds for the investigation of the MS/MS behavior of spider toxins.     

Surface tension anisotropy in the mechanics of ellipsoidal micelles

Expressions for the calculation of the surface tension at any point of ellipsoidal micelle surface in the directions of the main axes have been derived within the framework of the droplet model of molecular aggregates. It has been established that the anisotropy of the surface tension of an ellipsoid of revolution-shaped micelle depends on the ellipsoid shape factor and the polar angle. At low shape factors, the anisotropy is low in the vicinity of points with maximum and minimum curvatures and it reaches its maximum value at angles of ≈π/4. The maximum is shifted toward larger polar angles with an increase in the shape factor.     

Interaction of a low-pressure gas flame and heterogeneous catalytic processes on the reactor surface

Conclusions (1) It was shown that the Semenov theory in various modes of chain termination quantitatively describes oxyhydrogen combustion near the first ignition limit with allowance for the interaction between the flame and the catalytic processes on the reactor wall. (2) Numerical modeling of oxyhydrogen ignition in the diffusion-controlled chain-termination mode detected the dependence of the rate “constant” for heterogeneous chain initiation on the model of the reaction in the gas. (3) For the first time, the change in the specific rate of heterogeneous chain initiation during a single ignition was determined. (4) method for controlling the low-pressure flame mode by affecting tubes far from the reactor was proposed and applied. Original Russian Text ? E.N. Aleksandrov, S.N. Kozlov, N.M. Kuznetsov, 2006, published in Doklady Akademii Nauk, 2006, Vol. 407, No. 5, pp. 630–633. Presented by Academician A.E. Shilov October 5, 2005     

Spherical CR-manifolds of dimension 3

A sphericalCR-structure on a smooth (2n–1)-manifoldM is a maximal collection of distinguished charts modeled on the boundary H ⁿ of the complex hyperbolic space, where coordinate changes are restrictions of transformations from PU(n, 1). There exists a development map , where is the universal covering ofM, which is a local diffeomorphism. We study properties of the development maps and holonomy groups of sphericalCR-structures on compact 3-dimensional manifolds. We also give constructions of fundamental domains for some discrete subgroups of PU(2, 1).