Design of a tripartite network for the prediction of drug targets

Drug-target networks have aided in many target prediction studies aiming at drug repurposing or the analysis of side effects. Conventional drug-target networks are bipartite. They contain two different types of nodes representing drugs and targets, respectively, and edges indicating pairwise drug-target interactions. In this work, we introduce a tripartite network consisting of drugs, other bioactive compounds, and targets from different sources. On the basis of analog relationships captured in the network and so-called neighbor targets of drugs, new drug targets can be inferred. The tripartite network was found to have a stable structure and simulated network growth was accompanied by a steady increase in assortativity, reflecting increasing correlation between degrees of connected nodes leading to even network connectivity. Local drug environments in the tripartite network typically contained neighbor targets and revealed interesting drug-compound-target relationships for further analysis. Candidate targets were prioritized. The tripartite network design extends standard drug-target networks and provides additional opportunities for drug target prediction.     

Acetone and perdeuterated acetone in UV-IMS

Measuring a mixture of acetone and perdeuterated acetone (acetone-d6) with an ultra-high resolution drift time ion mobility spectrometer (resolving power of R_p?=?235) and ultraviolet ionization (10.6 eV) at ambient pressure reveals three separated peaks. Two of the peaks can easily be associated with acetone and perdeuterated acetone. In a former publication several findings indicated an exchange of a methyl group and the formation of a H₃COCD₃ related peak. In this work the formed ion species were analyzed with a high resolution drift time ion mobility time of flight mass spectrometer. The mass spectra clearly show the formation of three proton-bound dimer peaks whereas the peak between acetone and acetone-d6 is a proton-bound mixed dimer consisting of one acetone and one acetone-d6 molecule.     

Noise induced transition in Josephson junction with second harmonic

We show a noise induced transition in Josephson junction with fundamental as well as second harmonic. A periodically modulated multiplicative colored noise can stabilize an unstable configuration in such a system. The stabilization of the unstable configuration has been captured in the effective potential of the system obtained by integrating out the high frequency components of the noise. This is a classical approach to understand the stability of an unstable configuration due to the presence of such stochasticity in the system and our numerical analysis confirms the prediction from the analytical calculation.     

Observation on Symmetry Properties of Sodium Zinc(II)-2,9,16,23-phthalocyanine Tetracarboxylate in Water:NaOH Solution

The shift of the Q-band of sodium zinc(II)-2,9,16,23-phthalocyanine tetracarboxylate (ZnPc(COONa)₄) to about 800 nm is attributed to the influence of the electron-donating property of the carboxylate groups substituted in the β–position. ZnPc(COONa)₄ which was found to have a symmetry of D _2h characterized by a splitting of the Q transition. This splitting was interpreted by the formation of dianionic symmetric ZnPc(COONa)₄ resulting from the dissociation of the pyrrole protons as well as the possibility of Na⁺ dissolution of ZnPc(COONa)₄ in the aqueous solution of NaOH.     

Immobilization of a nickel complex onto functionalized Fe3O4 nanoparticles: a green and recyclable catalyst for synthesis of 5-substituted 1H-tetrazoles and oxidation reactions

Research on Chemical Intermediates - In the present research, a magnetically recoverable catalyst was easily prepared by anchoring nickel onto the surface of organically modified magnetite...