Decoding the Fucose Migration Product during Mass-Spectrometric analysis of Blood Group Epitopes

Fucose is a signaling carbohydrate that is attached at the end of glycan processing. It is involved in a range of processes, such as the selectin-dependent leukocyte adhesion or pathogen-receptor interactions. Mass-spectrometric techniques, which are commonly used to determine the structure of glycans, frequently show fucose-containing chimeric fragments that obfuscate the analysis. The rearrangement leading to these fragments—often referred to as fucose migration—has been known for more than 25 years, but the chemical identity of the rearrangement product remains unclear. In this work, we combine ion-mobility spectrometry, radical-directed dissociation mass spectrometry, cryogenic IR spectroscopy of ions, and density-functional theory calculations to deduce the product of the rearrangement in the model trisaccharides Lewis x and blood group H2. The structural search yields the fucose moiety attached to the galactose with an α(1→6) glycosidic bond as the most likely product.     

The Synthesis and Evaluation of Diethyl Benzylphosphonates as Potential Antimicrobial Agents

The impact of substituent at phenyl ring of diethyl benzylphosphonate derivatives on cytotoxic activity was studied. The organophosphonates were obtained based on developed palladium-catalyzed α, β-homodiarylation of vinyl esters protocol. The new synthetic pathway toward 1,2-bis(4-((diethoxyphosphoryl)methyl)phenyl)ethyl acetate was proposed which significantly improves the overall yield of the final product (from 1% to 38%). Several newly synthesized organophosphonates were tested as new potential antimicrobial drugs on model Escherichia coli bacterial strains (K12 and R2-R3). All tested compounds show the highest selectivity and activity against K12 and R2 strains. Preliminary cellular studies using MIC and MBC tests and digestion of Fpg after modification of bacterial DNA suggest that selected benzylphosphonate derivatives may have greater potential as antibacterial agents than typically used antibiotics such as ciprofloxacin, bleomycin and cloxacillin. These compounds are highly specific for pathogenic E. coli strains based on the model strains used and may be engaged in the future as new substitutes for commonly used antibiotics, which is especially important due to the increasing resistance of bacteria to various drugs and antibiotics.     

Stabilized parametric cooper-pair pumping in a linear array of coupled Josephson junctions

We present an experimentally realizable stabilized charge pumping scheme in a linear array of Cooper-pair boxes. The system design intrinsically protects the pumping mechanism from severe errors, especially current reversal and spontaneous charge excitation. The quantum Zeno effect is implemented to further diminish pumping errors. The characteristics of this scheme are considered from the perspective of improving the current standard. Such an improvement bears relevance to the closure of the so-called measurement triangle (see [D. Averin, Nature (London) 434, 285 (2005)).     

Energy transfer in oligofluorene-C60 and C60-oligofluorene-C60 donor-acceptor conjugates

Two complementary series of C(60)-(Fl)(n) and C(60)-(Fl)(n)-C60 (Fl = 9,9-dihexylfluorene-2,7-diyl; n = 1-5) derivatives with terminal N-methylfulleropyrrolidine units have been synthesized from CHO-(Fl)(n) and CHO-(Fl)(n)-CHO precursors via 1,3-dipolar cycloaddition reaction of in situ generated azomethine ylides with an excess of C60. In solution electrochemical experiments, these conjugates give rise to amphoteric redox behavior. Three consecutive quasireversible reduction waves have been observed at the expected potentials for the N-methylfulleropyrrolidine cores. For the C(60)-(Fl)(n)-C(60) series, each reduction wave is a two-electron process with no observable interaction between the C(60) units. Two or, in some cases, three oxidation waves--most of them irreversible--are ascribed to the oligofluorene system. These waves are cathodically shifted with an increasing number of fluorene units and anodically shifted by the conjugated terminal aldehyde units, compared to the N-methylfulleropyrrolidine termini. Steady-state and time-resolved photolytic techniques show that an efficient transduction of singlet excited-state energy transfer prevails from the photoexcited oligofluorene to the energy accepting fullerene.     

Triazole bridges as versatile linkers in electron donor-acceptor conjugates

Aromatic triazoles have been frequently used as π-conjugated linkers in intramolecular electron transfer processes. To gain a deeper understanding of the electron-mediating function of triazoles, we have synthesized a family of new triazole-based electron donor-acceptor conjugates. We have connected zinc(II)porphyrins and fullerenes through a central triazole moiety--(ZnP-Tri-C(60))--each with a single change in their connection through the linker. An extensive photophysical and computational investigation reveals that the electron transfer dynamics--charge separation and charge recombination--in the different ZnP-Tri-C(60) conjugates reflect a significant influence of the connectivity at the triazole linker. Except for the m4m-ZnP-Tri-C(60)17, the conjugates exhibit through-bond photoinduced electron transfer with varying rate constants. Since the through-bond distance is nearly the same for all the synthesized ZnP-Tri-C(60) conjugates, the variation in charge separation and charge recombination dynamics is mainly associated with the electronic properties of the conjugates, including orbital energies, electron affinity, and the energies of the excited states. The changes of the electronic couplings are, in turn, a consequence of the different connectivity patterns at the triazole moieties.     

An integrated experimental and analytical approach to the chemical state imaging of iron in brain gliomas using X-ray absorption near edge structure spectroscopy

X-ray absorption near-edge structure spectroscopy is used for human neoplastic tissues in order to investigate distributions and chemical states of iron. The specimens used in this study were obtained intraoperatively from brain gliomas of different types and various grades of malignancy and from a control subject. An integrated experimental and analytical approach toward topographic and quantitative analysis in thin freeze-dried cryo-sections is presented. The full XANES spectra at the Fe absorption K edge show the presence of both chemical forms of Fe in the analyzed points of the tissues. The main goal of the work is the chemical state imaging of Fe in tissue areas. Topographic analysis of Fe speciation in the tissues investigated with the use of the XANES technique indicates the presence of microstructures where Fe²⁺ is dominant as well as those with a high abundance of the oxidized form of Fe. The quantitative analysis shows that for all cases the content of the oxidized form of Fe is significantly higher in comparison with Fe²⁺. The highest level of Fe³⁺ is found in the control sample, and the lowest one for the glioma of the highest grade of malignancy. The content of either Fe²⁺ or Fe³⁺ is increased in low grade gliomas in comparison to high-grade malignant tumors.     

Application of Sugar Phosphonates for the Preparation of Higher Carbon Monosaccharides

ABSTRACT

Reaction of sugar derived phosphonates [Sug-C(O)CH₂P(O)(OMe)₂] with sugar aldehydes (Sug'-CHO) provides the higher enones of the general formula Sug-C(O)CH=CH-Sug' with the trans configuration of the double bond. The phosphonate method is superior to the previously used phosphorane methodology [Sug-C(O)CH=PPh₃ + Sug'-CHO] since sugar phosphonates can be prepared in much higher yields and are much more nucleophilic than corresponding phosphoranes. The sugar enones are reduced to appropriate allylic alcohols with zinc borohydride; the stereoselectivity of this process is >97:3 (with the D-glycero isomer predominating) when the carbonyl group is placed at the α-position to the sugar ring. CD spectroscopy was used for the determination of the configuration of higher sugar allylic alcohols.     

Wide temperature range of an electrically tunable selective reflection of light by oblique helicoidal cholesteric

ABSTRACT

Oblique helicoidal cholesteric liquid crystals (Ch_OH) offer an unprecedented opportunity to tune selective reflection of light in a broad spectral range from ultraviolet to infrared by an electric field. The major problem is that the temperature range of stable Ch_OH is typically above the room temperature and is relatively narrow, a few degrees. In this work, we demonstrate that by using a mixture of flexible dimeric and rod-like molecules, one can significantly expand the temperature range of intense Bragg reflection, from 16°C to 27°C. We demonstrate that the selective reflection peak, reflection intensity, bandwidth and threshold electric field are all temperature dependent and discuss the associated mechanisms. The results show that both the electric field and temperature can be used to tune the structural colour of oblique helicoidal cholesteric structures. The proposed material can be used in switchable optical devices based on liquid crystals, such as light modulators, indoor smart windows, and filters.     

Precise Control of Intramolecular Charge‐Transport: The Interplay of Distance and Conformational Effects

A new series of donor–bridge–acceptor (D–B–A) compounds consisting of π‐conjugated oligofluorene (oFL) bridges between a ferrocene (Fc) electron‐donor and a fullerene (C₆₀) electron‐acceptor have been synthesized. In addition to varying the length of the bridge (i.e., mono‐ and bi‐fluorene derivatives), four different ways of linking ferrocene to the bridge have been examined. The Fc moiety is linked to oFL: 1) directly without any spacer, 2) by an ethynyl linkage, 3) by a vinylene linkage, and 4) by a p‐phenylene unit. The electronic interactions between the electroactive species have been characterized by cyclic voltammetry, absorption, fluorescence, and transient absorption spectroscopy in combination with quantum chemical calculations. The calculations reveal exceptionally close energy‐matching between the Fc and the oFL units, which results in strong electronic‐coupling. Hence, intramolecular charge‐transfer may easily occur upon exciting either the oFLs or Fcs. Photoexcitation of Fc–oFL–C₆₀ conjugates results in transient radical‐ion‐pair states. The mode of linkage of the Fc and FL bridge has a profound effect on the photophysical properties. Whereas intramolecular charge‐separation is found to occur rather independently of the distance, the linker between Fc and oFL acts (at least in oFL) as a bottleneck and significantly impacts the intramolecular charge‐separation rates, resulting in beta values between β_CS 0.08 and 0.19 Å^?1. In contrast, charge recombination depends strongly on the electron‐donor–acceptor distance, but not at all on the linker. A value of β_CR (0.35±0.01 Å^?1) was found for all the systems studied. Oligofluorenes prove, therefore, to be excellent bridges for probing how small structural variations affect charge transport in D–B–A systems.     

High‐Yield Synthesis of Amido‐Functionalized Polyoctahedral Oligomeric Silsesquioxanes by Using Acyl Chlorides

Homosubstituted amido‐functionalized polyoctahedral oligomeric silsesquioxanes (POSS) have been synthesized by using acyl chlorides in high yields (ca. 95 %). The method proved to be superior over “conventional” syntheses applying carboxylic acids or acid anhydrides, which are much less efficient (ca. 60 % yield). A palette of aryl and alkyl groups has been used as side‐chains. The structures of the resulting amide‐POSS are supported by multinuclear ¹H, ¹³C, ²⁹Si NMR and FTIR spectroscopy and their full conversion into octasubstituted derivatives was confirmed using mass spectrometry. We also demonstrate that the functionalized silsesquioxanes with bulky organic side‐chains attached to cubic siloxane core form spherical‐like, well‐separated nanoparticles with a size of approximately 5 nm.