Novel approach to the synthesis of 3-acyl substituted indolizines. The synthesis of 3-(indolizinyl-2)alanine and 4-(indolizinyl-3) homoalanine derivatives

A novel approach to the synthesis of 3-acylindolizines and the transformations of some acids into tryptophane analogues are described. Reaction of ethyl 2-pyridinylacetate and methyl 2-quinolinylacetate with N-trifluoroacetyl-5-bromo-4-oxonorvaline methylester led to N-trifluoroacetyl-3-(1-ethoxycarbonylindolizinyl-2) alanine methyl ester and N-trifluoroacetyl-3-(3-methoxycarbonylpyrrolo [1,2-a]quinolinyl-2) alanine methyl ester, respectively. Treatment of ethyl 2-pyridinylacetate and 2-pyridinylacetonitrile, first with N,N-dimethylformamide dimethyl acetal (DMFDMA), followed by reaction with phenacyl bromide, gave the corresponding 3-benzoylindolizines, while the reaction of ethyl 2-pyridinylacetate and 2-pyridinylacetonitrile with DMFDMA, followed by treatment with (S)-N-trifluoroacetyl-5-bromo-4-oxonorvaline methyl ester, gave the corresponding N-trifluoroacetyl-4-oxo-4-(indolizinyl-3)homoalanine methyl esters.     

Downfalls of Chemical Probes Acting at the Kinase ATP-Site: CK2 as a Case Study

Protein kinases are a large class of enzymes with numerous biological roles and many have been implicated in a vast array of diseases, including cancer and the novel coronavirus infection COVID-19. Thus, the development of chemical probes to selectively target each kinase is of great interest. Inhibition of protein kinases with ATP-competitive inhibitors has historically been the most widely used method. However, due to the highly conserved structures of ATP-sites, the identification of truly selective chemical probes is challenging. In this review, we use the Ser/Thr kinase CK2 as an example to highlight the historical challenges in effective and selective chemical probe development, alongside recent advances in the field and alternative strategies aiming to overcome these problems. The methods utilised for CK2 can be applied to an array of protein kinases to aid in the discovery of chemical probes to further understand each kinase’s biology, with wide-reaching implications for drug development.     

The steroid monooxygenase from Rhodococcus rhodochrous; a versatile biocatalyst

The substrate scope of a steroid monooxygenase (STMO) from Rhodococcus rhodochrous DSM 43269 was investigated for a large range of different ketone substrates. These studies revealed that this enzyme not only oxygenates steroids, but also ketone moieties of a series of other open-chain ketones, such as cyclohexyl methyl ketone, cyclopentyl methyl ketone, and 3-acetylindole. Furthermore, the STMO catalyzed the oxygenation of cyclobutanone derivatives. Comparative biotransformations with recombinant Escherichia coli resting cells harboring the STMO, the cycloalkanone monooxygenase (CAMO) from Cylindrocarpon radicicola or the cyclohexanone monooxygenase (CHMO) from Acinetobacter calcoaceticus revealed that the STMO is enantiodivergent compared to the CHMO-type. Moreover, the STMO resulted in a higher enantiomeric excess of the product lactones compared to the known BVMOs of the same enantiopreference, such as cyclopentanone monooxygenases.     

Low-temperature versus oxygen plasma treatment of water-based TiO2 paste for dye-sensitized solar cells

High-temperature treatment steps in fabrication process of dye sensitized solar cell (DSSC) significantly contribute to the manufacturing costs and limit the use of temperature sensitive substrates. Therefore our aim was to develop a simple method for the preparation of water-based TiO₂ paste. The paste is based on peroxotitanic acid (PTA) sol–gel matrix and commercial TiO₂ nanoparticles (P25). Two fabrication processes to decompose/transform the PTA matrix in the printed TiO₂ layer are explored and combined: annealing at temperatures up to 250 °C and/or oxygen plasma treatment. The results show that the PTA matrix in the paste converts to anatase phase and to some extent also attaches to the TiO₂ nanoparticles P25 acting as an interconnecting network within TiO₂ layer. The transformation of the PTA matrix occurs around 250 °C, but in the presence of TiO₂ nanoparticles P25 it starts already at 120 °C. In addition the results reveal that the crystallization is achievable also solely with the oxygen plasma treatment. The efficiency of the TiO₂ layers, exposed to different post-deposition treatments, is evaluated in DSSCs. The results show that oxygen plasma treatment of the TiO₂ layers could efficiently replace temperature curing at 250 °C. Within this study the DSSCs with the efficiency up to 4.2 % measured under standard test conditions (1,000 W/m², AM1.5, 25 °C) were realized.     

Structure Switching and Modulation of the Magnetic Properties in Diarylethene‐Bridged Metallosupramolecular Compounds by Controlled Coordination‐Driven Self‐Assembly

We report three self‐assembled iron complexes that comprised an anti‐parallel open form (o‐ L _anti), a parallel open form (o‐ L _syn), and a closed form (c‐ L ) of diarylethene conformers. Under kinetic control, Fe^II₂(o‐ L _anti)₃ was isolated, which exhibited a dinuclear structure with diamagnetic properties. Under light‐irradiation control, Fe^II₂(c‐ L )₃ was prepared and exhibited paramagnetism and spin‐crossover behaviour. Under thermodynamic control and in the presence of indispensable [Fe^III(Tp*)(CN)₃]^?, Fe^II₂(o‐ L _anti)₃ and Fe^II₂(c‐ L )₃ transformed into tetranuclear Fe^III₂Fe^II₂(o‐ L _syn)₂, which exhibited complete spin‐crossover behaviour at T_1/2=353 K.     

Mechanistic investigation and DFT calculation of the new reaction between S-methylisothiosemicarbazide and methyl acetoacetate

A study on the synthesis and mechanistical aspects of formation of 3-methyl-5-oxo-3-pyrazolin-1-carboxamide (MOPC) starting from S-methylisothiosemicarbazide hydrogen iodide and methyl acetoacetate was performed. In the alkaline aqueous solution, the intermediate methyl acetoacetate S-methylisothiosemicarbazone undergoes substitution of CH₃S^? anion by hydroxide anion, cyclization, carbanion formation, and elimination of methanol, thus yielding corresponding Na-enolate salt of pyrazol-5-one derivative. The structure of the compound obtained after protonation of the formed enolate salt was determined by means of spectroscopic techniques and single-crystal X-ray diffraction analysis. The mechanism of conversion of methyl acetoacetate S-methylisothiosemicarbazone into MOPC was investigated by means of the B3LYP functional, and it was found that the reaction is thermodynamically controlled.     

2,5-Dihydro-1,2-oxaphosphole Derivatives in the Reaction of 3,3-Disubstituted Allenylphosphonic Amidoesters with Electrophilic Reagents

Abstract

The reaction of 3,3-disubstituted allenylphosphonic amidoesters with halogenes, sulfenyl and selenenylchlorides proceeds with five-membered heterocyclization and formation of 2-N,N-dialkylamino-2,5-dihydro-1,2-oxaphosphole 2-oxides:     

Grand canonical ensemble approach to electrochemical thermodynamics,kinetics, and model Hamiltonians

The unique feature of electrochemistry is the ability to control reaction thermodynamics and kinetics by the application of electrode potential. Recently, theoretical methods and computational approaches within the grand canonical ensemble (GCE) have enabled to explicitly include and control the electrode potential in first principles calculations. In this review, recent advances and future promises of GCE density functional theory and rate theory are discussed. Particular focus is devoted to considering how the GCE methods either by themselves or combined with model Hamiltonians can be used to address intricate phenomena such as solvent/electrolyte effects and nuclear quantum effects to provide a detailed understanding of electrochemical reactions and interfaces.     

On a quest of reverse translation

Explaining the emergence of life is perhaps central and the most challenging question in modern science. Within this area of research, the emergence and evolution of the genetic code is supposed to be a critical transition in the evolution of modern organisms. The canonical genetic code is one of the most dominant aspects of life on this planet, and thus studying its origin is critical to understanding the evolution of life, including life’s emergence. In this sense it is possible to view the ribosome as a digital-to-analogue information converter. Why the translation apparatus evolved, is one of the enduring mysteries of molecular biology. Assuming the hypothesis that during the emergence of life evolution had to first involve autocatalytic systems, which only subsequently acquired the capacity of genetic heredity, in the present article we discuss some aspects and causes of the possible emergence of digital, discrete information arising from analogue information realized in the intra- and inter-molecular interactions throughout molecular evolution. How such reverse translation was achieved at a molecular level is still unclear. The results of such debates and investigations might shift current biological paradigms and might also have a momentous significance for modern philosophy in understanding our place in the universe.