Heavy metal complexation by N-acyl(thio)urea-functionalized cavitands: synthesis, extraction and potentiometric studies

The synthesis and binding properties of resorcinarene-based cavitands functionalized with N-acylthiourea moieties towards different cations are described. Extraction studies with metal (Pb²⁺, Cu²⁺, Ag⁺, Hg²⁺, Cd²⁺, Eu³⁺, Fe³⁺, K⁺, Na⁺, and Ca²⁺) picrates and the incorporation in ion selective electrodes (ISEs), show that there is more than a 40% increase of the Ag⁺ extraction for N-acylthiourea ionophores (2, 3, and 8) in comparison with N-benzoyl-N′-benzylthiourea (9). Ionophore 8, which has a C₃ chain between the platform and the ionophore, extracts two times more Cu²⁺ than the more rigid one (2). Stoichiometry studies showed for ligand 2 a ligand/metal ratio of 1:1, while for model compound 9 a ratio of 1:2 was found. Potentiometric studies of electrodes revealed that cavitands 2, 3, and 8 induce a significantly different selectivity pattern compared to the cation-exchanger used, as well as model compound 9. Especially, a considerable enhancement of the selectivity towards Ag⁺ and Pb²⁺ over K⁺, Ca²⁺, and Na²⁺ ions was observed.     

NMR parameters and geometries of OHN and ODN hydrogen bonds of pyridine-acid complexes

In this paper, equations are proposed which relate various NMR parameters of OHN hydrogen-bonded pyridine-acid complexes to their bond valences which are in turn correlated with their hydrogen-bond geometries. As the valence bond model is strictly valid only for weak hydrogen bonds appropriate empirical correction factors are proposed which take into account anharmonic zero-point energy vibrations. The correction factors are different for OHN and ODN hydrogen bonds and depend on whether a double or a single well potential is realized in the strong hydrogen-bond regime. One correction factor was determined from the known experimental structure of a very strong OHN hydrogen bond between pentachlorophenol and 4-methylpyridine, determined by the neutron diffraction method. The remaining correction factors which allow one also to describe H/D isotope effects on the NMR parameters and geometries of OHN hydrogen bond were determined by analysing the NMR parameters of the series of protonated and deuterated pyridine- and collidine-acid complexes. The method may be used in the future to establish hydrogen-bond geometries in biologically relevant functional OHN hydrogen bonds.     

Comparative characteristics of texture and properties of hybrid organic–inorganic adsorbents functionalized by amine and thiol groups

The structure and texture characteristics of the hybrid organic–inorganic adsorbents, which were obtained by using of two-component systems of “structure-forming agent/trifunctional silane”, are compared as follows: the first component is Si(OC₂H₅)₄ or (C₂H₅O)₃Si–A–Si(OC₂H₅)₃, where A = –(CH₂)₂– or –C₆H₄–; the second one is alkoxysilane with amine (–NH₂, NH, –NH(CH₂)₂NH₂) and thiol (–SH) groups. The adsorbents, derived from TEOS, have more accessible functional groups (2.6–4.2 mmol/g) than xerogels, which are based on bis(triethoxysilanes) (1.0–2.6 mmol/g). On another hand xerogels derived from bis(triethoxysilanes) have a more extended porous structure (S_sp =516–968 m²/g, V_s = 0.418–1.490 cm³/g, d = 2.5–15.0 nm) than those that are based on TEOS (S_sp = 4–631 m²/g, V_s = 0.005–1.382 cm³/g, d = 2.3–17.7 nm). The geometric dimensions of functional groups have a more essential effect on the parameters of porous structure in the case of TEOS-derived xerogels. Using solid-state NMR spectroscopy, it has been shown that in synthesis of xerogels with the use of TEOS, the molecular frame of globules is formed by structural units Qⁿ (n = 2,3,4), and the functional groups exist as structural units of Tⁿ (n = 2,3). The xerogels obtained with using bis(triethoxysilanes) consist only of structural units of Tⁿ-type (n = 1,2,3).     

Compact contracted Gaussian-type basis sets for halogen atoms. Basis-set superposition effects on molecular properties

Compact, contracted Gaussian basis sets for halogen atoms are generated and tested in ab initio molecular calculations. These basis sets have similar structure to that of Huzinaga and co-workers' (HTS ) sets; however, they give both better atomic total energies and better properties of atomic valence orbitals. These sets, after splitting of valence orbitals and augmenting with polarization functions, provide molecular results that agree well with those given by extended calculations. Basis set superposition error (BSSE ) is calculated using the counterpoise method. BSSE has only slight influence on calculated equilibrium geometry, shape of potential curve, and electric properties (dipole and quadrupole moments) of molecules. However, atomization energies may be significantly changed by the BSSE .     

O‐Benzyl‐N‐tert‐butoxy­carbonyl‐N‐methyl‐l‐tyrosine

The crystal structure of the title compound, alternatively called 3‐[4‐(benzyl­oxy)­phenyl]‐2‐(N‐tert‐butoxy­car­bonyl‐N‐methyl­amino)­propi­onic acid, C₂₂H₂₇NO₅, has been studied in order to ex­amine the role of N‐methyl­ation as a determinant of peptide conformation. The conformation of the tert‐butoxy­carbonyl group is trans–trans. The side chain has a folded conformation and the two phenyl rings are effectively perpendicular to one another. The carboxyl­ate hydroxyl group and the urethane carbonyl group form a strong intermolecular O—H?O hydrogen bond.     

Absorption and magnetic circular dichroism (MCD) studies of 1,4,5,8-naphthalenetetracarboxy diimides in terms of CASSCF method and FC theory

The electronic and geometrical structures of the low-energy states of 1,4,5,8-naphthalenetetracarboxylic dianhydride parent diimide (1) are studied in terms of the complete active space self-consistent field (CASSCF) method employed at different level with respect to the size and the quality of the active space. In the framework of the vibronic model based on the Franck–Condon (FC) effect the absorption and magnetic circular dichroism (MCD) spectra are studied in the excitation region corresponding to two low-energy 1¹A_g → 1¹B_2u and 1¹A_g → 1¹B_3u electronic transitions in diimides. In that (visible) excitation region the CASSCF computations with the 5π[4n]5π active space (i.e., the naphthalene-like π orbitals enriched by the four lone pair orbitals of the oxygen atoms) were found to reproduce very well the empirical absorption and the MCD spectra measured for the dicyclohexyl-N,N^′-substituted diimide (2). At the same CASSCF/5π[4n]5π level, the electronic absorption of diimides in the near UV excitation region were attributed to the 1¹A_g → 2¹B_1u, 1¹A_g → 2¹B_3u and 1¹A_g → 2¹B_2u electronic transitions; the latter two are mostly localized on the “diimide chromophore”. For these transitions the calculated magneto-optical characteristics, such as sign pattern and intensity distribution in the MCD spectrum, were found to be consistent with that experimentally observed for the diimide 2 compound.     

The Erd?s–Sós Conjecture for Graphs withoutC4

Erd?s and Sós conjectured in 1963 that ifGis a graph of ordernand sizee(G) with, thenGcontains every treeTof sizek. We prove the conjecture in the case whereGdoes not contain the cycleC₄.     

An -minimal Boolean algebra

For every linear order we define a notion of -minimal Boolean algebra and then give a consistent example of an -minimal algebra. The Stone space of our algebra contains a point such that is an example of a countably tight, initially -compact, non-compact space. This answers a question of Dow and van Douwen.

     

Experimental (FT‐IR) and theoretical (DFT) studies on prototropy and H‐bond formation for pyrazine‐2‐amidoxime

The results of the first structural studies (with the use of both experimental and theoretical methods) on pyrazine‐2‐amidoxime (PAOX) were shown and discussed. FT‐IR spectra were recorded in different concentrations of the PAOX in apolar solvent to check the possibility of the inter‐ or intramolecular hydrogen‐bond formation. All possible tautomers–rotamers of PAOX were then theoretically considered at the DFT(B3LYP)/6‐311+G** level in vacuo. For selected isomers, calculations were also performed at higher levels of theory {B3LYP/6‐311+G(3df,2p) and G3B3}. Based on the results of DFT calculations, the most stable isomers were found, and their total free energies and infrared spectra were calculated. The energy variation plots for the N8?C7?N9?O10 and N1?C2?C7?N9 dihedral angles were also computed to find two energy barriers, one for E/Z isomerization around the C7?N9 double bond and the other one for rotation of the pyrazinyl ring around the C2?C7 single bond. The results show that the stability of the PAOX isomers strongly depend on their configuration and orientation of the substituents. The possibilities of inter‐ and intramolecular hydrogen bonds were also experimentally and theoretically checked. Finally, a potential of mean force was determined in CHCl₃ for a dimer of PAOX with hexamethylphosphoramide. Both, experimental and theoretical results are in agreement. Copyright © 2016 John Wiley & Sons, Ltd.