Thioflavin T hydroxylation at basic pH and its effect on amyloid fibril detection

The fluorescent dye thioflavin T (ThT) is commonly used for in situ amyloid fibril detection. In this work, we focused on the spectroscopic properties and chemical stability of ThT in aqueous solution as a function of pH, temperature, and dye concentration. A reversible hydroxylation process occurs in alkaline solutions, which was characterized using a combination of UV-vis absorption spectroscopy, proton NMR, and density functional theory (DFT). On the basis of these studies, we propose a chemical structure for the hydroxylated form. Finally, by means of fluorescence spectroscopy, ThT hydroxylation effects on in situ amyloid detection have been investigated, providing new insights on the efficiency of the ThT assay for quantitative fibril evaluation at basic pH.     

Charged molecular films on brownian particles: structure, interactions, and relation to stability

The interfacial film of physically adsorbed ionic amphiphilic molecules on submicron particles dispersed in water was studied by a combination of surface tension measurements, laser light scattering (LLS) and high-shear experiments in a microchannel. General features in the structure and morphology of the molecular film are identified and understood in the framework of the two-step Langmuir adsorption model deduced from the adsorption isotherm. On the basis of this approach, the phase transitions and structural ordering of the film at the solid-liquid interface are analyzed in detail. A novel methodology based on high-shear aggregation experiments subsequently analyzed by means of LLS is proposed and turns out to be able to provide significant information on the phase transitions and structural arrangements of the adsorbed molecules (in substantial agreement with the adsorption isotherm model) as well as on the resulting interactions. Particularly important for applications is the result that, with no added salt, the films on two particles can adhere/fuse, leading to aggregation as long as an uncovered (hydrophobic) patch is present (unsaturated molecular layers). In the opposite case of fully developed layers, by analyzing the mechanism of shear aggregation of charged particles in the low-salt limit, we show that, when the hydrophobic attraction is absent, short-range hydration repulsive forces dominate over Derjaguin-Landau-Verwey-Overbeek (DLVO) forces and adhesion can never be achieved even upon application of very high collision energies. Consistently, a lower limiting boundary for the hydration interaction is calculated and found to be in agreement with data in the literature.     

Rare tetranuclear mixed-valent [Mn(II)2Mn(IV)2] clusters as building blocks for extended networks

We report the synthesis of a series of mixed valence Mn(II/IV) tetranuclear clusters [Mn(II)(2)Mn(IV)(2)O(2)(heed)(2)(EtOH)(6)Br(2)]Br(2) (), [Mn(II)(2)Mn(IV)(2)O(2)(heed)(2)(H(2)O)(2)Cl(4)].2EtOH.H(2)O (.2EtOH.H(2)O), [Mn(II)(2)Mn(IV)(2)O(2)(heed)(2)(heedH(2))(2)](ClO(4))(4) (), [Mn(II)(2)Mn(IV)(2)O(2)(heed)(2)(MeCN)(2)(H(2)O)(2)(bpy)(2)](ClO(4))(4) () and [Mn(II)(2)Mn(IV)(2)O(2)(heed)(2)(bpy)(2)Br(4)].2MeOH (.2MeOH). Clusters are constructed from the tripodal ligand N,N-bis(2-hydroxyethyl)ethylene diamine (heedH(2)) and represent rare examples of tetranuclear Mn clusters possessing the linear trans zig-zag topology, being the first Mn(II/IV) mixed-valent clusters of this type. The molecular clusters can then be used as building blocks in tandem with the (linear) linker dicyanamide ([N(CN)(2)](-), dca(-)) for the formation of a novel extended network {[Mn(II)(2)Mn(IV)(2)O(2)(heed)(2)(H(2)O)(2)(MeOH)(2)(dca)(2)]Br(2)}(n) (), which exhibits a rare form of the 2D herring bone topology.     

Solvation in pure liquids: what can be learned from the use of pairs of indicators?

The solvation of six solvatochromic probes in a large number of solvents (33-68) was examined at 25 degrees C. The probes employed were the following: 2,6-diphenyl-4-(2,4,6-triphenylpyridinium-1-yl) phenolate (RB); 4-[(E)2-(1-methylpyridinium-4-yl)ethenyl] phenolate, MePM; 1-methylquinolinium-8-olate, QB; 2-bromo-4-[(E)-2-(1-methylpyridinium-4-yl)ethenyl] phenolate, MePMBr, 2,6-dichloro-4-(2,4,6-triphenyl pyridinium-1-yl) phenolate (WB); and 2,6-dibromo-4-[(E)-2-(1-methylpyridinium-4-yl)ethenyl] phenolate, MePMBr(2), respectively. Of these, MePMBr is a novel compound. They can be grouped in three pairs, each with similar pK(a) in water but with different molecular properties, for example, lipophilicity and dipole moment. These pairs are formed by RB and MePM; QB and MePMBr; WB and MePMBr(2), respectively. Theoretical calculations were carried out in order to calculate their physicochemical properties including bond lengths, dihedral angles, dipole moments, and wavelength of absorption of the intramolecular charge-transfer band in four solvents, water, methanol, acetone, and DMSO, respectively. The data calculated were in excellent agreement with available experimental data, for example, bond length and dihedral angles. This gives credence to the use of the calculated properties in explaining the solvatochromic behaviors observed. The dependence of an empirical solvent polarity scale E(T)(probe) in kcal/mol on the physicochemical properties of the solvent (acidity, basicity, and dipolarity/polarizability) and those of the probes (pK(a), and dipole moment) was analyzed by using known multiparameter solvation equations. For each pair of probes, values of E(T)(probe) (for example, E(T)(MePM) versus E(T)(RB)) were found to be linearly correlated with correlation coefficients, r, between 0.9548 and 0.9860. For the mercyanine series, the values of E(T)(probe) also correlated linearly, with (r) of 0.9772 (MePMBr versus MePM) and 0.9919 (MePMBr(2) versus MePM). The response of each pair of probes (of similar pK(a)) to solvent acidity is the same, provided that solute-solvent hydrogen-bonding is not seriously affected by steric crowding (as in case of RB). We show, for the first time, that the response to solvent dipolarity/polarizability is linearly correlated to the dipole moment of the probes. The successive introduction of bromine atoms in MePM (to give MePMBr, then MePMBr(2)) leads to the following linear decrease: pK(a) in water, length of the phenolate oxygen-carbon bond, length of the central ethylenic bond, susceptibility to solvent acidity, and susceptibility to solvent dipolarity/polarizability. Thus studying the solvation of probes whose molecular structures are varied systematically produces a wealth of information on the effect of solute structure on its solvation. The results of solvation of the present probes were employed in order to test the goodness of fit of two independent sets of solvent solvatochromic parameters.     

Asymptotic approximations for second-order linear difference equations in Banach algebras, II

A Liouville-Green (WKB) asymptotic approximation theory is developed for some classes of linear second-order difference equations in Banach algebras. The special case of linear matrix difference equations (or, equivalently, of second-order systems) is emphasized. Rigorous and explicitly computable bounds for the error terms are obtained, and this when both, the sequence index and some parameter that may enter the coefficients, go to infinity. A simple application is made to orthogonal matrix polynomials in the Nevai class.     

Improvements in cobalt determination by thermospray flame furnace atomic absorption spectrometry using an on-line derivatization strategy

An on-line derivatization strategy was developed for improving cobalt sensitivity using thermospray flame furnace atomic absorption spectrometry (TS-FF-AAS) as the analytical technique. This strategy involves the generation of a volatile cobalt compound, providing better sample vaporization efficiency. The effect of sodium diethyldithiocarbamate (DDTC) as complexing agent on the integrated absorbance signal was evaluated. Parameters including the pH of complex formation, complex concentration and volume, sample volume, flame gas composition and tube atomization configuration were optimized. A wide linear range (from 23 microg L(-1) to 3 mg L(-1); r(2)=0.9786) was obtained, with the best one (r(2)=0.9992) attained from 23 to 400 microg L(-1) with a sample throughput of 30 h(-1). The improvement in the detection power was 17-fold when compared to FAAS, which provides 7 microg L(-1) as the limit of detection when considered TS-FF-AAS technique. A relative standard deviation (n=10) of 4% for a cobalt solution containing 50 microg L(-1) was attained, and the accuracy of the procedure was evaluated through certified reference materials (IAEA-SL-1, lake sediment; and ISS-MURST-A1, Antarctic marine sediment). Good agreement between the results at the 95% confidence level was observed.     

Performance characterization of an insulator-based dielectrophoretic microdevice

Dielectrophoresis (DEP), the motion of particles in nonuniform electric fields, is a nondestructive electrokinetic (EK) transport mechanism can be used to concentrate and separate bioparticles. Traditionally, DEP has been performed employing microelectrodes, an approach that is expensive due to the cost of microelectrode fabrication. An alternative is insulator-based DEP (iDEP), an inexpensive method where nonuniform electric fields are created with arrays of insulating structures. This study presents the effects of operating conditions on the dielectrophoretic behavior of polystyrene microparticles under iDEP. Experiments were performed employing microchannels containing insulating structures that worked as insulators. The parameters varied were pH (8-9) and conductivity (25-100 microS/cm) of the bulk medium, and the magnitude of the applied field (200-850 V/cm). Optimal operating conditions in terms of pH and conductivity were obtained, and the microdevice performance was characterized in terms of concentration factor and minimum electric field required (minimum energy consumption). This is the first report on improving iDEP processes when EOF is present. DEP and EOF have been studied extensively, however, this study integrates the effect of suspending medium characteristics on both EK phenomena. These findings will allow improving the performance of iDEP microdevices achieving the highest concentration fold with the lowest energy consumption.     

Stability and interface quality of GeO2 films grown on Ge by atomic oxygen assisted deposition

The composition of GeO(2) films grown on Ge has been studied for different molecular deposition processes and after exposure to ambient air. The stoichiometry, the interaction with moisture, and the interfacial details of the films are shown to be dramatically process dependent.