Contrasting effects of solar radiation and nitrates on the bioavailability of dissolved organic matter to marine bacteria

We evaluated the role of nitrate (NO₃^?) as a potential photosensitizer and the bacterial responses to dissolved organic matter (DOM) phototransformation from coastal waters in the northwestern Mediterranean Sea. In spring, without any addition of NO₃^?, the exposure of 0.2 μm filtered seawater (DOM-solution) to natural solar radiation (i.e. Full Sun [FS], including photosynthetically available [PAR: 400–700 nm], ultraviolet-A [UVAR: 315–400 nm] and ultraviolet-B [UVBR: 280–315 nm] radiations) stimulated bacterial production (BP) and abundance (BA) in natural assemblages (0.8 μm filtered seawater) by 80 and 20% as compared to unexposed (Dark) DOM-solutions, respectively. This stimulation resulted primarily from the exposure to PAR. When NO₃^? (30 μM) was added to DOM-solution before irradiation, BP and BA increased by 150 and 65% in FS compared to Dark, respectively, due to both PAR and UVBR. By contrast, in summer, the exposure of DOM-solution caused a decrease in BP by 30% but an increase in BA by 23% in FS compared to Dark, regardless of the NO₃^? addition before irradiation. The inhibition of BP resulted mainly from UVAR, whereas the stimulation of BA resulted from PAR. These results suggest contrasting effects along seasons of solar radiation and NO₃^? on DOM bioavailability, depending on its initial chemical composition.     

An ion trap-ion mobility-time of flight mass spectrometer with three ion sources for ion/ion reactions

This instrument combines the capabilities of ion/ion reactions with ion mobility (IM) and time-of-flight (TOF) measurements for conformation studies and top-down analysis of large biomolecules. Ubiquitin ions from either of two electrospray ionization (ESI) sources are stored in a three dimensional (3D) ion trap (IT) and reacted with negative ions from atmospheric sampling glow discharge ionization (ASGDI). The proton transfer reaction products are then separated by IM and analyzed via a TOF mass analyzer. In this way, ubiquitin +7 ions are converted to lower charge states down to +1; the ions in lower charge states tend to be in compact conformations with cross sections down to ～880 Ų. The duration and magnitude of the ion ejection pulse on the IT exit and the entrance voltage on the IM drift tube can affect the measured distribution of conformers for ubiquitin +7 and +6. Alternatively, protein ions are fragmented by collision-induced dissociation (CID) in the IT, followed by ion/ion reactions to reduce the charge states of the CID product ions, thus simplifying assignment of charge states and fragments using the mobility-resolved tandem mass spectrum. Instrument characteristics and the use of a new ion trap controller and software modifications to control the entire instrument are described.     

[H3tren] templated iron fluorides; synthesis, crystal structures and Mössbauer studies

The hydrothermal synthesis, using tris-(2-ethylamino)amine (tren) as a template, and the crystal structures of three new hybrid iron fluorides, (H₃O)₂·[H₃tren]₂·(FeF₆)₂·(FeF₅(H₂O))·2H₂O (I), [H₃tren]₂·(FeF₆)₂·(FeF₂(H₂O)₄)·8H₂O (II) and [H₃tren]₂·(FeF₆)·(F)₃·H₂O (III), are reported. I, II, and III are triclinic (P-1), monoclinic (P2₁/c) and orthorhombic (I222), respectively. The structure of I is built up from isolated FeF₆ and FeF₅(H₂O) distorted octahedra separated by triprotonated [H₃tren]³⁺ cations, disordered H₃O⁺ cations and H₂O molecules. In II, Fe^IIIF₆ and neutral [Fe^IIF₂(H₂O)₄] octahedra form, together with [H₃tren]³⁺ cations, infinite (100) layers separated by extra water molecules. The structure of III consists of isolated and disordered FeF₆ octahedra, fluoride anions F⁻ connected to [H₃tren]³⁺ cations and extra fluoride anions F⁻ disordered with H₂O molecules. All [H₃tren]³⁺ cations have a “spider” type conformation. ⁵⁷Fe Mössbauer characterization shows that +III valence state can only be considered for iron cations in I and III and preliminary Mössbauer results are consistent with the presence of both +II and +III valences for iron cations in II, in agreement with the crystallographic results.     

Synthesis of Functional Polymers by Post‐Polymerization Modification

Post‐polymerization modification is based on the direct polymerization or copolymerization of monomers bearing chemoselective handles that are inert towards the polymerization conditions but can be quantitatively converted in a subsequent step into a broad range of other functional groups. The success of this method is based on the excellent conversions achievable under mild conditions, the excellent functional‐group tolerance, and the orthogonality of the post‐polymerization modification reactions. This Review surveys different classes of reactive polymer precursors bearing chemoselective handles and discusses issues related to the preparation of these reactive polymers by direct polymerization of appropriately functionalized monomers as well as the post‐polymerization modification of these precursors into functional polymers.     

Telomerization: Advances and Applications of a Versatile Reaction

A chameleonic reaction : The transition‐metal‐catalyzed telomerization of 1,3‐dienes with different nucleophiles leads to the synthesis of numerous products which can be applied in the cosmetic and pharmaceutical industry as well as in polymers and flavors. This Review shows the versatility of the telomerization based on recent research and industrial applications.

     

Ring-opening polymerization of DD-lactide catalyzed by Novozyme 435

In contrast to LLA, DLA is converted in toluene solution under mild reaction conditions (50-70 degrees C) using Novozyme 435 (immobilized CALB) to form the corresponding polymer. The influence of several parameters, such as enzyme concentration, temperature and monomer concentration, on the polymerization rate and the monomer conversion was studied. In contrast to the Novozyme 435 catalyzed polymerization of epsilon-caprolactone, enzyme deactivation occurs. It is attributed to the deprivation of water from the enzyme. This work points out that by careful selection of the reaction conditions, it is possible to obtain poly(D-lactide) in reasonable molecular weights and in high yields using Novozyme 435 catalysis.     

A reference-gene-based quantitative PCR method as a tool to determine <Emphasis Type="Italic">Fusarium</Emphasis> resistance in wheat

In recent years, plant breeders made great progress in breeding Fusarium-tolerant wheat lines. However, total resistance to this genus of plant pathogenic fungi has not yet been achieved as the resistance genes are located on several distinct genetic regions. Visual scoring of disease symptoms in combination with the analysis of mycotoxins is commonly applied to assess the tolerance of new lines. Both approaches are indirect methods and do not mandatorily determine the accumulated fungal biomass. Quantitative PCR is a useful tool to assess fungal biomass based on the abundance of organism-specific DNA. The aim of this study was the development of a quantitative PCR assay for trichothecene-producing Fusarium species and to adapt this method for resistance assessment of wheat lines artificially infected with Fusarium graminearum and Fusarium culmorum. Several DNA-extraction methods for wheat samples were evaluated and optimized for downstream real-time PCR analysis and furthermore, a new reference-gene-based approach for more accurate quantification of Fusarium biomass in cereals is presented. The co-determination of a plant gene was used to compensate for unequal DNA-extraction efficiencies.     

Ant colony optimization with a specialized pheromone trail for the car-sequencing problem

This paper studies the learning process in an ant colony optimization algorithm designed to solve the problem of ordering cars on an assembly line (car-sequencing problem). This problem has been shown to be NP-hard and evokes a great deal of interest among practitioners. Learning in an ant algorithm is achieved by using an artificial pheromone trail, which is a central element of this metaheuristic. Many versions of the algorithm are found in literature, the main distinction among them being the management of the pheromone trail. Nevertheless, few of them seek to perfect learning by modifying the internal structure of the trail. In this paper, a new pheromone trail structure is proposed that is specifically adapted to the type of constraints in the car-sequencing problem. The quality of the results obtained when solving three sets of benchmark problems is superior to that of the best solutions found in literature and shows the efficiency of the specialized trail.     

An axiomatic analysis of concordance–discordance relations

Outranking methods propose an original way to build a preference relation between alternatives evaluated on several attributes that has a definite ordinal flavor. Indeed, most of them appeal the concordance/non-discordance principle that leads to declaring that an alternative is “superior” to another, if the coalition of attributes supporting this proposition is “sufficiently important” (concordance condition) and if there is no attribute that “strongly rejects” it (non-discordance condition). Such a way of comparing alternatives is rather natural. However, it is well known that it may produce binary relations that do not possess any remarkable property of transitivity or completeness. This explains why the axiomatic foundations of outranking methods have not been much investigated, which is often seen as one of their important weaknesses. This paper uses conjoint measurement techniques to obtain an axiomatic characterization of preference relations that can be obtained on the basis of the concordance/non-discordance principle. It emphasizes their main distinctive feature, i.e. their very crude way to distinguish various levels of preference differences on each attribute. We focus on outranking methods, such as ELECTRE I, that produce a reflexive relation, interpreted as an “at least as good as” preference relation. The results in this paper may be seen as an attempt to give such outranking methods a sound axiomatic foundation based on conjoint measurement.