Identification of Folding Intermediates of Streblin,The Most Stable Serine Protease: Biophysical Analysis

Streblin, a serine proteinase from plant Streblus asper, has been used to investigate the conformational changes induced by pH, temperature, and chaotropes. The near/far UV circular dichroism activities under fluorescence emission spectroscopy and 8-aniline-1-naphthalene sulfonate (ANS) binding have been carried out to understand the unfolding of the protein in the presence of denaturants. Spectroscopic studies reveal that streblin belongs to the α+β class of proteins and exhibits stability towards chemical denaturants, guanidine hydrochloride (GuHCl). The pH-induced transition of this protein is noncooperative for transition phases between pH 0.5 and 2.5 (midpoint, 1.5) and pH 2.5 and 10.0 (midpoint, 6.5). At pH 1.0 or lower, the protein unfolds to form acid-unfolded state, and for pH 7.5 and above, protein turns into an alkaline denatured state characterized by the absence of ANS binding. At pH 2.0 (1 M GuHCl), streblin exists in a partially unfolded state with characteristics of a molten globule state. The protein is found to exhibit strong and predominant ANS binding. In total, six different intermediate states has been identified to show protein folding pathways.     

Probing the Binding of Syzygium-Derived α-Glucosidase Inhibitors with N- and C-Terminal Human Maltase Glucoamylase by Docking and Molecular Dynamics Simulation

Human maltase glucoamylase (MGAM) is a potent molecular target for controlling post prandial glucose surplus in type 2 diabetes. Binding of small molecules from Syzygium sp. with α-glucosidase inhibitory potential in MGAM has been investigated in silico. Our results suggest that myricetin was the most potent inhibitor with high binding affinity for both N- and C-terminals of MGAM. Molecular dynamics revealed that myricetin interacts in its stretched conformation through water-mediated interactions with C-terminal of MGAM and by normal hydrogen bonding with the N-terminal. W1369 of the extended 21 amino acid residue helical loop of C-terminal plays a major role in myricetin binding. Owing to its additional sugar sites, overall binding of small molecules favours C-terminal MGAM.     

Dye sensitization of a large band gap semiconductor by an iron(III) complex

The Fe(III) complex, [Fe^III(HQS)₃] (HQS = 8-hydroxyquinoline-5-sulfonic acid), is found to effect sensitization of the large band gap semiconductor, TiO₂. The role of interfacial electron transfer in sensitization of TiO₂ nanoparticles by surface adsorbed [Fe^III(HQS)₃] was studied using femtosecond time scale transient absorption spectroscopy. Electron injection has been confirmed by direct detection of the electron in the conduction band. A TiO₂-based dye-sensitized solar cell (DSSC) was fabricated using [Fe^III(HQS)₃] as a sensitizer, and the resulting DSSC exhibited an open-circuit voltage value of 425 mV. The value of the short-circuit photocurrent was found to be 2.5 mA/cm². The solar to electric power conversion efficiency of the [Fe^III(HQS)₃] sensitized TiO₂-based DSSC device was 0.75 %. The results are discussed in the context of sensitization of TiO₂ by other Fe(II)-dye complexes.     

Magnetic polymer nanocomposites for environmental and biomedical applications

Hybrid nanomaterials have received voluminous interest due to the combination of unique properties of organic and inorganic component in one material. In this class, magnetic polymer nanocomposites are of particular interest because of the combination of excellent magnetic properties, stability, and good biocompatibility. Organic–inorganic magnetic nanocomposites can be prepared by in situ, ex situ, microwave reflux, co-precipitation, melt blending, and ceramic–glass processing and plasma polymerization techniques. These nanocomposites have been exploited for in vivo imaging, as superparamagnetic or negative contrast agents, drug carriers, heavy metal adsorbents, and magnetically recoverable photocatalysts for degradation of organic pollutants. This review article is mainly focused on fabrication of magnetic polymer nanocomposites and their applications. Different types of magnetic nanoparticles, methods of their synthesis, properties, and applications have also been reviewed briefly. The review also provides detailed insight into various types of magnetic nanocomposites and their synthesis. Diverse applications of magnetic nanocomposites including environmental and biomedical uses have been discussed.     

Mechanistic aspects for the oxidation of brilliant green dye by chloramine-T in the presence of perchloric acid: a spectrophotometric kinetic approach

The kinetics of a triarylmethane dye, brilliant green (BG), by sodium N-chloro-p-toluenesulfonamide or chloramine-T (CAT) was studied spectrophotometrically in HClO₄ media at 303 K. Under identical experimental conditions, the rate law was ?d [BG]/dt = k [BG] [H⁺]. Variations in ionic strength (μ) of the medium had no effect on the oxidation velocity. Addition of p-toluenesulfonamide, the reduction product of CAT and Cl^?, had no significant effect on the rate of reaction. The values of rate constants observed at five different temperatures (298, 303, 308, 313, and 318 K) were utilized to calculate the activation parameters. The observed results have been explained by a general mechanism and the related rate law has been obtained. The process demonstrated in this study is cost effective, which holds great promise in potential application for pollutant control.     

Supramolecular self-assembly and nanoencapsulation of [60]fullerene by bis-β-cyclodextrin

Bis-β-cyclodextrin connected via ethylene diamine on the primary side of the β-cyclodextrin was synthesized and used for the supramolecular non-covalent inclusion complex with C₆₀ in a mixed solvent system at room temperature. The apparent association constant of the 2:2 inclusion complex determined by combination of UV–Vis absorbance and Benesi–Hildebrand equation was found to be 1.78 × 10⁶ M^?1. The product obtained was highly water-soluble and superior in stability in aqueous medium as compared to previously known β-cyclodextrin/C₆₀ complex. The non-covalent self-assembly of bis-β-cyclodextrin and C₆₀ was characterized and confirmed from FT-IR, UV–Vis, XRD and TGA. The supramolecular aggregation behavior and particle size of the inclusion complex was found from transmission electron microscope and static light scattering measurements. The size of the inclusion complex was found to be ~30 ± 5 nm.     

Role of graphene in structural transformation of zirconium oxide

Fine powders of zirconium oxide (ZrO₂) were prepared using zirconium oxychloride by combustion method. The crystalline size of pure ZrO₂ was in range of 14–45 nm. Graphene was incorporated in ZrO₂ using graphene oxide as precursor and reducing it with hydrazine hydrate. X-Ray diffraction, Fourier transform infra-red spectroscopy, thermogravimetric analysis and Raman spectroscopy methods were used to characterize the samples. The role of graphene in structural transformation of ZrO₂ to monoclinic phase was clearly observed.     

Synthesis of SnO2 nanostructures by ultrasonic-assisted sol–gel method

Fluorine doped SnO₂ nanostructures were grown using ultrasonic assisted sol–gel method. The gel was obtained by dissolving stannous chloride in methanol with ammonium fluoride as dopant followed by irradiation with ultrasonic vibrations. Obtained samples were characterized by structural, morphological and optical studies. All the peaks in the X-ray diffractograms are identified and indexed as tetragonal cassiterite structure. Negative slope of Williamson–Hall plots indicates compressive strain. Particle size of SnO₂ nanostructures is decreases with increases in concentration of fluorine doping. Atomic force microscopy, scanning electron microscopy and transmission electron microscopy studies confirm the formation of ring like porous structures and then hollow tube like growth with increase in the fluorine concentration. Peaks in Raman spectra also indicate strong confinement in SnO₂ particles. Distinct peaks in the PL spectra make the structure suitable for photovoltaic applications.     

Sodium alginate/HPMC/liquid paraffin emulsified (o/w) gel beads,by factorial design approach; and in vitro analysis

The present study involved development of a novel sodium alginate (SA)/HPMC/light liquid paraffin emulsified (o/w) gel beads containing Diclofenac sodium (DS) as an active pharmaceutical ingredient and its site specific delivery by using hard gelatin capsule fabricated by enteric coated Eudragit L-100 polymer. Emulsified gel beads were formulated by 3-level factorial design, ionic gelatin method. The obtained beads were characterized by Fourier transform infrared, X-ray diffraction and Field emission scanning electron microscope analysis. The variables such as SA (X₁), HPMC (X₂), were optimized for drug loading and in vitro drug release with the help of response surface methodology (RSM). The RSM analysis predicted that SA was significant for both drug loading (p = 0.0005) and drug release (p = 0.0041). HPMC was only significant for drug release (p = 0.0154). The cross-product contribution (2FI) and quadratic model were found to be adequate and statistically accurate with correlation value (R²) of 0.9054 and 0.9450 to predict the drug loading and drug release respectively. An increase in concentration of HPMC and SA decreases the drug loading as well as the drug release. The obtained optimum values of drug loading and DS released were 7.43 % and 85.54 % respectively, which were well in agreement with the predicted value by RSM.     

Efficient Chemical Protein Synthesis using Fmoc-Masked N-Terminal Cysteine in Peptide Thioester Segments

We report an operationally simple method to facilitate chemical protein synthesis by fully convergent and one-pot native chemical ligations utilizing the fluorenylmethyloxycarbonyl (Fmoc) moiety as an N-masking group of the N-terminal cysteine of the middle peptide thioester segment(s). The Fmoc group is stable to the harsh oxidative conditions frequently used to generate peptide thioesters from peptide hydrazide or o-aminoanilide. The ready availability of Fmoc-Cys(Trt)-OH, which is routinely used in Fmoc solid-phase peptide synthesis, where the Fmoc group is pre-installed on cysteine residue, minimizes additional steps required for the temporary protection of the N-terminal cysteinyl peptides. The Fmoc group is readily removed after ligation by short exposure (<7 min) to 20 % piperidine at pH 11 in aqueous conditions at room temperature. Subsequent native chemical ligation reactions can be performed in presence of piperidine in the same solution at pH 7.