Have flagella a preferred orientation during early stages of biofilm formation?: AFM study using patterned substrates

Biofilm development involves several stages and flagellar expression of bacteria is considered an important factor in this process. However, its role in the earliest stage of biofilm development is not yet clear. In order to analyse this topic, Pseudomonas fluorescens samples were trapped on a patterned gold surface with sub-microtrenches (ST) so as to hinder their motility, and nanostructured gold with random orientation (SR) was used as control substrate. Atomic force microscopic (AFM) observations were made on untreated samples. Initially, ca. 75% of the flagella on ST and 85% of flagella on SR are oriented towards the neighbouring bacteria. Some of them made contact and surrounded the cells. Subsequently, 2-D raft structures formed on SR inert substrates with lateral curly flagella, while those at the poles of the rafts turned towards the nearest cell group. A few flagella and the formation of 3-D bacterial structures were observed on toxic substrates like copper. Results showed that patterned substrates are suitable tools to detect the orientation of flagella in the earliest stage of biofilm formation on solid opaque surfaces avoiding sample pre-treatment.     

Urea-, squaramide-, and sulfonamide-based anion receptors: a thermodynamic study

In this work, we compare the anion-binding capabilities of receptors 1-5, characterized by similar structures, but possessing different hydrogen-bond-donor moieties (urea, squaramide, and sulfonamide). The presence of chromophoric substituents on the receptor's skeleton allowed the determination of association constants by performing UV/Vis titrations with the investigated anions on solutions of the receptors in pure acetonitrile. Additional quantitative studies of the anion-binding properties of receptors 1-5 were performed by isothermal titration calorimetry (ITC). The experimental results indicated that 1 and 2 formed 1:1 hydrogen-bonded complexes with most of the anions investigated. In the case of receptors 3-5, the formation of the 1:1 adduct was observed only with anions of low basicity (i.e., chloride, bromide, iodide, and hydrogen sulfate). With more basic anions (i.e., acetate and dihydrogen phosphate), both spectrophotometric and ITC titrations accounted for the deprotonation of the sulfonamide group, involving the formation of the conjugated base of the receptor.     

Uniqueness of post-gelation solutions of a class of coagulation equations

We prove well-posedness of global solutions for a class of coagulation equations which exhibit the gelation phase transition. To this end, we solve an associated partial differential equation involving the generating functions before and after the phase transition. Applications include the classical Smoluchowski and Flory equations with multiplicative coagulation rate and the recently introduced symmetric model with limited aggregations. For the latter, we compute the limiting concentrations and we relate them to random graph models.     

Super-nucleation in nanocomposites and confinement effects on the crystallizable components within block copolymers, miktoarm star copolymers and nanocomposites

In this paper we reexamine recent results obtained by our group on the crystallization of nanocomposites and linear and miktoarm star copolymers in order to obtain some general features of their crystallization properties. Different nanocomposites have been prepared where a close interaction between the polymer matrix and the nano-filler has been achieved: in situ polymerized high density polyethylene (HDPE) on carbon nanotubes (CNT); and polycaprolactone (PCL) and poly(ethylene oxide) (PEO) covalently bonded to carbon nanotubes. In all these nanocomposites a “super-nucleation” effect was detected where the CNTs perform a more efficient nucleating action than the self-nuclei of the polymer matrix. It is believed that such a super-nucleation effect stems from the fact that the polymer chains are tethered to the surface of the CNT and can easily form nuclei. For polystyrene (PS) and PCL block copolymers, miktoarm star copolymers (with two arms of PS and two arms of PCL) were found to display more compact morphologies for equivalent compositions than linear PS-b-PCL diblock copolymers. As a consequence, the crystallization of the PCL component always experienced much higher confinement in the miktoarm stars case than in the linear diblock copolymer case. The consequences of the topological confinement of the chains in block copolymers and nanocomposites on the crystallization were the same even though the origin of the effect is different in each case. For nanocomposites a competition between super-nucleation and confinement was detected and the behavior was dominated by one or the other depending on the nano-filler content. At low contents the super-nucleation effect dominates. In both cases, the confinement increases as the nano-filler content increases or the second block content increases (in this case a non-crystallizable block such as PS). The consequences of confinement are: a reduction of both crystallization and melting temperatures, a strong reduction of the crystallinity degree, an increase in the supercooling needed for isothermal crystallization, a depression of the overall crystallization rate and a decrease in the Avrami index until values of one or lower are achieved indicating a nucleation control on the overall crystallization kinetics.     

Influence of crystal polymorphism on mechanical and barrier properties of poly(l-lactic acid)

The effect of crystal polymorphism on barrier and mechanical properties of PLLA is detailed in this contribution. PLLA films containing different amounts of α and α′ crystal forms were prepared by annealing quenched PLLA at different temperatures. The polymorphic structure of the films was analyzed by X-ray diffraction. Mechanical properties and permeability to water vapor were investigated as a function of degree of crystallinity (w_C) and related to crystal polymorphism developed during annealing. The polymorphic structure of PLLA significantly affects mechanical and barrier properties. The α crystal modification provides a better barrier to water vapor and a higher Young’s modulus, compared to films containing the α′ modification, but a lower elongation at break. The varied barrier and mechanical properties were correlated to the different packing of PLLA chains in the two analyzed polymorphs. The conformational disorder of the α′ form makes this structure a mesophase (condis crystal), with remarkable effects on material properties.     

Structural flexibility and role of vicinal 2-thienyl rings in 2,3-dicyano-5,6-di(2-thienyl)-1,4-pyrazine, [(CN)2Th2Pyz], its palladium(II) complex [(CN)2Th2Pyz(PdCl2)2], and the related pentametallic pyrazinoporphyrazines [(PdCl2)4Th8TPyzPzM] (M = Mg(II)(H2O), Zn(II))

The solid state and solution structure of 2,3-dicyano-5,6-di(2-thienyl)-1,4-pyrazine, [(CN)(2)Th(2)Pyz], and its Pd(II) derivative, [(CN)(2)Th(2)Pyz(PdCl(2))(2)]·H(2)O, formed by reaction of [(CN)(2)Th(2)Pyz] with [(C(6)H(5)CN)(2)PdCl(2)] were characterized by X-ray, UV-visible, (1)H and (13)C NMR, and extended X-ray absorption fine structure (EXAFS) spectral measurements. The X-ray crystal structure of [(CN)(2)Th(2)Pyz] shows the presence of one thienyl ring positioned orthogonal to the rest of the molecule, with the two vicinal thienyl rings lying orthogonal to each other in a rare arrangement. NMR studies of [(CN)(2)Th(2)Pyz] in the solid state and in solutions of dimethylformamide or dimethyl sulfoxide confirm a nonequivalence of the thienyl rings in the solid state and also in solution. EXAFS results indicate that two distinct Pd(II) coordination sites are formed at the di(2-thienyl)pyrazino moiety of [(CN)(2)Th(2)Pyz(PdCl(2))(2)]·H(2)O, with identical Pd-N(pyz) (2.03(3) ?) and Pd-Cl (2.36(3) ?) bond lengths but with different Pd-S1 (2.25(4) ?) and Pd-S2 (3.21(5) ?) bond distances in an overall asymmetric molecular framework. Density functional theory (DFT) and time-dependent DFT (TDDFT) theoretical studies also provide information about the structure and spectral behavior of the precursor and its metalated Pd(II) derivative. (1)H/(13)C NMR and UV-visible spectral measurements were also carried out on two heteropentametallic porphyrazine macrocycles which were prepared by a reaction of PdCl(2) with [Th(8)TPyzPzM] where Th(8)TPyzPz = tetrakis-2,3-[5,6-di-(2-thienyl)-pyrazino]porphyrazinato dianion and M = Mg(II)(H(2)O) or Zn(II). Spectroscopic data on the newly synthesized [(PdCl(2))(4)Th(8)TPyzPzM] compounds suggest that the binding of PdCl(2) involves coordination sites of the type S(2(th))PdCl(2) with the two thienyl rings of each di(2-thienyl)pyrazino fragment bound to Pd(II) in an equivalent manner ("th-th" coordination). This is similar to what was found for the corresponding octapyridinated analogues ("py-py" coordination).     

Spin structure of surface-supported single-molecule magnets from isomorphous replacement and X-ray magnetic circular dichroism

Surface-supported arrays of Fe(4)-type Single-Molecule Magnets retain a memory effect and are of current interest in the frame of molecule-based information storage and spintronics. To reveal the spin structure of [Fe(4)(L)(2)(dpm)(6)] (1) on Au, an isomorphous compound [Fe(3)Cr(L)(2)(dpm)(6)] was synthesized and structurally and magnetically characterized (H(3)L is tripodal ligand 11-(acetylthio)-2,2-bis(hydroxymethyl)undecan-1-ol and Hdpm is dipivaloylmethane). The new complex contains a central Cr(3+) ion and has a S = 6 ground state as opposed to S = 5 in 1. Low-temperature X-ray Magnetic Circular Dichroism studies at Fe- and Cr-L(2,3) edges revealed that the antiparallel alignment between Fe and Cr spins is preserved on surfaces. Moreover, the different Fe-L(2,3) spectral features found in the homo- and heterometallic species disclose the opposing contribution of the central Fe(3+) ion in the former compound, proving that its ferrimagnetic spin structure is retained on surfaces.     

Discovery of novel anti-HIV active G-quadruplex-forming oligonucleotides

A series of d((5')TGGGAG(3')) sequences, 5'-conjugated with a variety of aromatic groups through phosphodiester linkages, were synthesized, showing CD spectra diagnostic of parallel-stranded, tetramolecular G-quadruplex structures. When tested for anti-HIV-1 and HIV-2 activity, potent inhibition of HIV-1 infection in CEM cell cultures was found, associated with high selectivity index values. Surface Plasmon Resonance assays revealed specific binding to HIV-1 gp120 and gp41.     

Use of the successive self-nucleation and annealing technique to characterize <Superscript>60</Superscript>Co gamma irradiated HDPEs

The application of the Successive Self-nucleation and Annealing (SSA) thermal fractionation technique can yield detailed information of the structural changes induced in linear polyethylene by irradiation. The production of tertiary carbons during the crosslinking reactions can be equivalent to the structural heterogeneity present in branched polyethylenes since in both cases interruption of the linear crystallizable sequences occurs, and these are structural differences that can be easily detected by thermal fractionation. We demonstrate how correlations between melting point and short chain branching content employed for branched polymers can be useful to characterize the distribution of chain heterogeneity produced by crosslinking. As the radiation dose is increased and the crosslinking content also increases, the distribution of chain heterogeneity gets broader as detected by SSA. When the results are coupled with morphological observations made by transmission electron microscopy, valuable information on the morphological changes produced by crosslinking can also be ascertained, since the distribution of lamellar thicknesses substantially broadens with crosslinking. Such a broad distribution can also be predicted from SSA by simple calculations performed employing a modified version of the Gibbs–Thomson equation and is expected on the basis of random crosslinking reactions.     

Drug resistance modulation in Staphylococcus aureus, a new biological activity for mesoionic hydrochloride compounds

Two salts of the mesoionic compounds 1,4-diphenyl-5-(5-nitro-2-furanyl)-1,3,4-thiadiazolium-2-thiol chloride (MC-1) and 4-phenyl-5-(5-nitro-2-furanyl)-1,3,4-thiadiazolium-2-phenylamine chloride (MC-2) were synthesized utilizing 1,4-diphenyl-thiosemicarbazide and 5-nitro-2-furoyl chloride as starting materials. Their structures were characterized by IR, 1H-NMR, 13C-NMR and elemental analysis. These compounds were analyzed for their influence on the effectiveness of norfloxacin, tetracycline, and erythromycin (standard antibiotics) against resistant strains of Staphylococcus aureus. MC-1 and MC-2, at sub-inhibitory concentrations of 16 μg/mL, favourably modulated the antibiotic activity of tetracycline by 16- and 32-fold, respectively (MIC), and that of erythromycin by 4-fold.