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91.
92.
Shahul H. Nilar Ngai Ling Ma Thomas H. Keller 《Journal of computer-aided molecular design》2013,27(9):783-792
The one-dimensional model of Hann et al. (J Chem Inf Comput Sci 41(3):856–864) has been extended to include reverse binding and wrap-around interaction modes between the protein and ligand to explore the complete combinatorial matrix of molecular recognition. The cumulative distribution function of the Maxwell–Boltzmann distribution has been used to calculate the probability of measuring the sensitivity of the interactions as the asymptotic limits of the distribution better describe the behavior of the interactions under experimental conditions. Based on our model, we hypothesized that molecules of lower complexity are preferred for target based screening campaigns, while augmenting such a library with moieties of moderate complexities maybe better suited for phenotypic screens. The validity of the hypothesis has been assessed via the analysis of the hit rate profiles for four ChemBL datasets for enzymatic and phenotypic screens. 相似文献
93.
A convenient and highly convergent method for the synthesis of new imidazo[1,2-a]pyridine-based coelenterazine analogues is reported. The imidazo[1,2-a]pyridine core was constructed through a condensation between 2-aminopyridine analogues and arylglyoxals. Additionally, a new approach to the synthesis of benzylglyoxals was introduced. The imidazo[1,2-a]pyridines display moderate antioxidant activities at a low micromolar level in 2,2-diphenyl-1-picrylhydrazyl (DPPH). 相似文献
94.
Clara Stiebing Christian Matthäus Christoph Krafft Andrea-Anneliese Keller Karina Weber Stefan Lorkowski Jürgen Popp 《Analytical and bioanalytical chemistry》2014,406(27):7037-7046
Macrophages are phagocytic cells which are involved in the non-specific immune defense. Lipid uptake and storage behavior of macrophages also play a key role in the development of atherosclerotic lesions within walls of blood vessels. The allocation of exogenous lipids such as fatty acids in the blood stream dictates the accumulation and quantity of lipids within macrophages. In case of an overexposure, macrophages transform into foam cells because of the large amount of lipid droplets in the cytoplasm. Raman micro-spectroscopy is a powerful tool for studying single cells due to the combination of microscopic imaging with spectral information. With a spatial resolution restricted by the diffraction limit, it is possible to visualize lipid droplets within macrophages. With stable isotopic labeling of fatty acids with deuterium, the uptake and storage of exogenously provided fatty acids can be investigated. In this study, we present the results of time-dependent Raman spectroscopic imaging of single THP-1 macrophages incubated with deuterated arachidonic acid. The polyunsaturated fatty acid plays an important role in the cellular signaling pathway as being the precursor of icosanoids. We show that arachidonic acid is stored in lipid droplets but foam cell formation is less pronounced as with other fatty acids. The storage efficiency in lipid droplets is lower than in cells incubated with deuterated palmitic acid. We validate our results with gas chromatography and gain information on the relative content of arachidonic acid and its metabolites in treated macrophages. These analyses also provide evidence that significant amounts of the intracellular arachidonic acid is elongated to adrenic acid but is not metabolized any further. The co-supplementation of deuterated arachidonic acid and deuterated palmitic acid leads to a non-homogenous storage pattern in lipid droplets within single cells. Figure a
? 相似文献
95.
Sheida Esmail Tehrani Long Quang Nguyen Giulia Garelli Bettina M. Jensen Tautgirdas Ruzgas Jenny Emnéus Stephan Sylvest Keller 《Electroanalysis》2021,33(12):2516-2528
A highly sensitive amperometric Prussian blue-based hydrogen peroxide sensor was developed using 3D pyrolytic carbon microelectrodes. A 3D printed multielectrode electrochemical cell enabled simultaneous highly reproducible Prussian blue modification on multiple carbon electrodes. The effect of oxygen plasma pre-treatment and deposition time on Prussian blue electrodeposition was studied. The amperometric response of 2D and 3D sensors to the addition of hydrogen peroxide in μM and sub-μM concentrations in phosphate buffer was investigated. A high sensitivity comparable to flow injection systems and a detection limit of 0.16 μM was demonstrated with 3D pyrolytic carbon microelectrodes at stirred batch condition 相似文献
96.
Yang Xin Dr. Boxuan Shen Prof. Mauri A. Kostiainen Prof. Guido Grundmeier Prof. Mario Castro Dr. Veikko Linko Dr. Adrian Keller 《Chemistry (Weinheim an der Bergstrasse, Germany)》2021,27(33):8564-8571
The surface-assisted hierarchical assembly of DNA origami nanostructures is a promising route to fabricate regular nanoscale lattices. In this work, the scalability of this approach is explored and the formation of a homogeneous polycrystalline DNA origami lattice at the mica-electrolyte interface over a total surface area of 18.75 cm2 is demonstrated. The topological analysis of more than 50 individual AFM images recorded at random locations over the sample surface showed only minuscule and random variations in the quality and order of the assembled lattice. The analysis of more than 450 fluorescence microscopy images of a quantum dot-decorated DNA origami lattice further revealed a very homogeneous surface coverage over cm2 areas with only minor boundary effects at the substrate edges. At total DNA costs of € 0.12 per cm2, this large-scale nanopatterning technique holds great promise for the fabrication of functional surfaces. 相似文献
97.
We investigate a Schrödinger problem with multiplicative Gaussian noise term and power-type nonlinearity on a bounded one-dimensional domain. In order to prove the existence and uniqueness of the variational solution, a further process will be introduced which allows to transform the stochastic nonlinear Schrödinger problem into a pathwise one. Galerkin approximations and compact embedding results are used. 相似文献
98.
Charlotte Kielar Siqi Zhu Guido Grundmeier Adrian Keller 《Angewandte Chemie (International ed. in English)》2020,59(34):14336-14341
High‐speed atomic force microscopy (HS‐AFM) is widely employed in the investigation of dynamic biomolecular processes at a single‐molecule level. However, it remains an open and somewhat controversial question, how these processes are affected by the rapidly scanned AFM tip. While tip effects are commonly believed to be of minor importance in strongly binding systems, weaker interactions may significantly be disturbed. Herein, we quantitatively assess the role of tip effects in a strongly binding system using a DNA origami‐based single‐molecule assay. Despite its femtomolar dissociation constant, we find that HS‐AFM imaging can disrupt monodentate binding of streptavidin (SAv) to biotin (Bt) even under gentle scanning conditions. To a lesser extent, this is also observed for the much stronger bidentate SAv–Bt complex. The presented DNA origami‐based assay can be universally employed to quantify tip effects in strongly and weakly binding systems and to optimize the experimental settings for their reliable HS‐AFM imaging. 相似文献
99.
Benjamin Byerly Kevin Kuhn Lisa Colletti Lynn Foster Russ Keller Elmer Lujan Alex Martinez Donivan Porterfield Dan Schwartz Khal Spencer Floyd Stanley Mariam Thomas Lisa Townsend Ning Xu Lav Tandon 《Journal of Radioanalytical and Nuclear Chemistry》2017,312(1):95-104
Thorough physical and chemical characterization of plutonium–beryllium (PuBe) neutron sources is an important capability with applications ranging from material accountancy to nuclear forensics. Characterization of PuBe sources is not trivial owing to range of existing source designs and the need for adequate infrastructure to deal with radiation and protect the analyst. This study demonstrates a method for characterization of three PuBe sources that includes physical inspection and imaging followed by controlled disassembly and destructive analysis. 相似文献
100.
Carlos A. Martinez Eric Keller Renzo Meijer Gerard Metselaar Gerlof Kruithof Curtis Moore Pei-Pei Kung 《Tetrahedron: Asymmetry》2010,21(19):2408-2412
An efficient four-step biotransformation-mediated synthesis of (1S)-1-(2,6-dichloro-3-fluorophenyl)ethanol in enantiomerically pure form is described. This compound is a key intermediate required for the preparation of PF-2341066, a potent inhibitor of c-Met/ALK that is currently in clinical development. The described synthesis was used to manufacture 6 kg of the title compound and can also be employed to produce the corresponding (1R)-enantiomer. 相似文献