Carbohydrate recognition of symmetrical tripodal receptor type tris(2-aminoethyl)amine derivatives

Carbohydrate recognition of some bioactive symmetrical tripodal receptor type tris(2-aminoethyl)amine (TAEA) derivatives was investigated. In calorimetric experiments, the highest binding constant (Ka) of compound C (C₃₅H₄₉N₅O₄S) with methyl α-d-mannopyranoside was Ka = 858 M^?1 with 1:1 stoichiometry. Formation of hydrogen bonds in binding between symmetrical tripodal receptor type compound C and sugars was suggested by the large negative values of ?H° (=?34 to ?511 kJ mol^?1). In a comparison of each set of α- and β-anomers of some monosaccharides (methyl α/β-d-galactopyranoside, methyl α/β-d-glucopyranoside, and methyl α/β-l-fucopyranoside), compound C showed that the binding constant of β-anomer was larger than that of the corresponding α-anomer, indicating higher β-anomer selectivity. The calculated energy-minimized structure of the complex of compound C with guest methyl α-d-mannopyranoside is also presented. The experimental results obtained from this work indicated that symmetrical tripodal receptor type TAEA derivative C has a lectin-like carbohydrate recognition property.     

QSNPlite, a software system for quantitative analysis of SNPs based on capillary array SSCP analysis

We present a newly developed software called "QSNPlite" that comprehensively interprets the data of SSCP and sequencing analyses obtained from capillary array electrophoresis systems used in the quantitative characterization of SNPs. QSNPlite assists in the genotyping of individuals with SNPs and in estimating the allele frequencies of SNPs using pooled DNA. We show that this estimation is accurate (mean absolute error, 1.4%) by comparing the results of the pooled analysis using QSNPlite with the true frequencies based on the allele counting after performing individual genotypings. The QSNPlite program runs on Windows XP and can be used to determine the allele frequencies of SNPs among a large number of individuals, such as in association studies of disease-responsible genes using the candidate gene approach.     

Matrix certified reference materials for environmental monitoring from the National Metrology Institute of Japan (NMIJ)

Matrix certified reference materials (CRMs) are playing an increasingly important role in environmental monitoring in Japan. The National Metrology Institute of Japan (NMIJ)/National Institute of Advanced Industrial Science and Technology (AIST) has been developing matrix CRMs for environmental monitoring since 2001, and has issued nine kinds of CRMs as NMIJ CRMs. The development of the CRMs was conducted in NMIJ in cooperation with candidate material producers. The isotope dilution mass spectrometry (IDMS) was principally adopted to give reliable certified values. Meanwhile, two or more analytical methods, whose levels of accuracy were well evaluated, were applied to avoid any possible analytical bias. Two typical certification processes, the certification of river water CRMs for trace element analysis and that of marine sediment CRMs for PCB and organochlorine pesticide analysis, are outlined as examples. Presented at -- “BERM-10” -- April 2006, Charleston, SC, USA.     

Metal-assisted assembly of pyridine-containing arylene ethynylene strands to enantiopure double helicates

Pyridine-containing arylene ethynylene strands were connected to the 2- and 2'-positions of (R)- and (S)-1,1'-binaphthyl templates. The arylene ethynylene moieties underwent intramolecular coordination with Ag(I) or Cu(I) ion to afford enantiopure double helicates. The double-helical structure was elucidated on the basis of circular dichroic (CD) spectra. The importance of intramolecular complexation of the double strands for the helicate formation was confirmed by comparison with a ligand bearing a single strand. Connection of the strands through an ether linkage enabled a sorting out of the Cotton effect induced by double-helical arylene ethynylene moieties. The CD exciton chirality method unambiguously proved that the termini of the strands approach each other upon complexation and that the sense of the induced helicity is the same as predicted by molecular modeling.     

Certified reference material for quantification of polycyclic aromatic hydrocarbons and toxic elements in tunnel dust (NMIJ CRM 7308-a) from the National Metrology Institute of Japan

The National Metrology Institute of Japan has issued a certified reference material of tunnel dust for polycyclic aromatic hydrocarbons (PAHs) and toxic element analyses. PAH certification was performed using isotope dilution mass spectrometry with deuterium-labeled PAHs as internal standards. Three extraction techniques (microwave-assisted extraction with toluene/methanol, Soxhlet extraction with toluene, and pressurized liquid extraction with toluene) were used, and the extracts were measured by gas chromatography/mass spectrometry with two different columns. For values of PAHs, 11 PAHs are provided as certified values between 0.294 and 20.3 mg/kg, and five PAHs are provided as information values. Certified values of five toxic elements (Cr, Ni, Pb, Mn, and Cd) obtained from microwave-assisted digestions and a combination of measurement techniques are also provided between 43.4 and 10.71 × 10³ mg/kg.     

Association between a photo-intermediate of a M-lacking mutant D75N of pharaonis phoborhodopsin and its cognate transducer

Pharaonis phoborhodopsin (ppR or pharaonis sensory rhodopsin II) is a receptor of the negative phototaxis of Natronobacterium pharaonis and forms a complex with its transducer pHtrII in membranes. Flash-photolyis of a D75N mutant did not yield the M-intermediate, but an O-like intermediate is observed in a ms time range. We examined the interaction between the D75N of ppR and t-Htr (truncated pHtrII). These formed a complex in the presence of 0.1% n-dodecyl-beta-maltoside, and the association accelerated the decay of the O of D75N from 15 to 56 s(-1). From the decay time constants under varying ratios of D75N and t-Htr, n, the molar ratio of D75N/t-Htr in the complex, and K(D), the dissociation constant, were estimated. The value of n was unity and K(D) was estimated to 146 nM. This K(D) value can be considered to be the association between the photo-intermediate and t-Htr, which is deduced by the method of estimation. Previously we (Photochem. Photobiol. 74 (2001) 489) reported a K(D) of 15 microM for the interaction between the wild-type and t-Htr by means of the change in M-decay rates. Therefore, this value should be the K(D) value for the interaction between M of the wild-type and t-Htr.     

Design and synthesis of dual inhibitors of acetylcholinesterase and serotonin transporter targeting potential agents for Alzheimer's disease

Highly efficient acetylcholinesterase (AChE) and serotonin transporter (SERT) dual inhibitors, (S)-4 and (R)-13 were designed and synthesized on the basis of the hypothetical model of AChE active site. Both compounds showed potent inhibitory activities against AChE and SERT. [structure: see text]     

Structural Elucidation of the Component Trisaccharide Obtained from the Acrosome Reaction-Inducing Substance of the Starfish Asterias Amurensis by Chemical Synthesis

Abstract

Okinaga et al.¹ have recently reported a novel trisaccharide obtained from the acrosome reaction-inducing substance (ARIS) of the starfish Asterias amurensis. The ARIS is essential for triggering the acrosome reaction in homologous spermatozoa, and the biological activity is due to the sugar moiety. The trisaccharide, composed of xylose (Xyl), galactose (Gal), and fucose (Fuc), and proposed to have a sequence of Xyll→3Gall→3 or 4[4 or 3-(So₃ ^?)]Fuc, was deduced to be one of the major structural units constructing the side chain of the high molecular carbohydrate portion of the ARIS. The sequence differs from similar oligosaccharides, found in hemicellulose² and composed of d-xylose, d-galactose, and l-fucose. The ARIS contains a unique saccharide chain having sulfated l-fucose as an internal residue. This unique structure prompted us to synthesize the trisaccharide as well as to reveal the anomeric configuration of Xyl and Gal moieties and the sulfated position of Fuc residue.     

Superconductivity in the graphite-potassium intercalation compound C8K

Superconducting properties of pseudo-single crystals of C₈K were investigated by low frequency a.c. magnetic susceptibility and electrical resistivity measurements. The measured values of T_c were between 128 and 198 mK for 13 samples. Measurements of the superconducting transition in a magnetic field revealed a remarkable anisotropy, such that if θ is defined as the angle between the applied magnetic field and the layer plane, type II superconductivity was observed for 0° ≦ ∣ θ ∣ ? 25° and type I superconductivity for 25° ? ∣ θ ∣≦ 90°. The angular dependences of H_c2 and H_c3 were fairly well-explained by the effective mass model.     

A new numerical method for quasi-particle spectroscopy around a pair of vortices in triplet superconductors

Triplet superconductors such as Sr₂RuO₄ and Na_xCoO₂·yH₂O are now found to be p-wave (p_x±ip_y) or f-wave ((p_x±ip_y)coscp_z) superconductors. In conventional singlet superconductors, vortices are quantized because phase of order parameter must rotate by 2π around a vortex. But triplet superconductors have a degree of freedom of spin, which is described by d-vector. The d-vector and phase can rotate by π around a vortex, separately. Therefore appearance of HQVs is predicted. Theoretically, it is found that a pair of HQVs is more stable than a singly quantized vortex, for several parameter regions.In this study, in order to investigate quasi-particle bound states around two vortices in s-wave superconductors, we have developed a new numerical method to solve the BdG equation for two vortices state, using Mathieu functions. We confirmed the validity of this method for two vortices state and applied it in case of a pair of vortices. And we solved it.