A method and program for mass quantum chemical calculations of protein—ligand docking complexes

A new fast computational method for mass calculations of docking complexes by the AM1/PM3 semiempirical methods is proposed. The computation time is shortened by at least an order of magnitude compared to alternative schemes of quantum chemical calculations. The root-mean-square deviation of the AM1 calculated energies of formation of complexes from the results obtained by conventional diagonalization procedure is at most 0.4 kcal mol⁻¹. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 418–420, February, 2008.     

Imaginary entanglement as a cost of unitarity

The contradiction between the fidelity necessary to determine the entanglement of states and the noise accompanying high-precision measurements is discussed. The unitary nonequivalence of quantum field representations in different regions of space leads to an additional noise, analogously to the Unruh effect. The cause of this noise is eliminated by rejecting the assumption of statistical independence of single-particle states of the quantum field. The smearing of one-particle states eliminates the reasons for the appearance of the Unruh noise and, simultaneously, leads to imaginary entanglement due to overlapping of these states.     

Synthesis and characterization of novel polyimides with 2,2‐bis[4(4‐aminophenoxy)phenyl]phthalein‐3′,5′‐bis(trifluoromethyl)anilide

2,2‐Bis[4(4‐aminophenoxy)phenyl]phthalein‐3′,5′‐bis(trifluoromethyl)anilide (6FADAP), containing fluorine and phthalimide moieties, was synthesized via the Williamson ether condensation reaction from 1‐chloro‐4‐nitrobenzene and phenolphthalein‐3′,5′‐bis(trifluoromethyl)anilide, which was followed by hydrogenation. Monomers such as 2,2‐bis[4(4‐aminophenoxy)phenyl]phthalein‐anilide containing phthalimide groups and 2,2‐bis[4(4‐aminophenoxy)phenyl]phthalein containing only phthalein moieties were also synthesized for comparison. The monomers were first characterized by Fourier transform infrared (FTIR), ¹H NMR, ¹⁹F NMR, elemental analysis, and titration and were then used to prepare polyimides with 2,2‐bis(3,4‐dicarboxyphenyl)hexafluoropropane dianhydride. The polyimides were designed to have molecular weights of 20,000 g/mol via off‐stoichiometry and were characterized by FTIR, NMR, gel permeation chromatography (GPC), differential scanning calorimetry, and thermogravimetric analysis. Their solubility, water absorption, dielectric constant, and refractive index were also evaluated. The polyimides prepared with 6FADAP, containing fluorine and phthalimide moieties, had excellent solubility in N‐methylpyrrolidinone, N,N‐dimethylacetamide, tetrahydrofuran, CHCl₃, tetrachloroethane, and acetone, and GPC analysis showed a molecular weight of 18,700 g/mol. The polyimides also exhibited a high glass‐transition temperature (290 °C), good thermal stability (～500 °C in air), low water absorption (1.9 wt %), a low dielectric constant (2.81), a low refractive index, and low birefringence (0.0041). © 2003 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 41: 3361–3374, 2003     

On the Development of Fundamentally New Organic Reagents

Based on an analysis of the processes of intramolecular signal transfer (the ordered motion of a quasiparticle, vibron) and structural isomerization, it was pointed out that, in principle, reagents of a new type can be developed with analytical effects fundamentally different from usual ones. The type of analytical response can vary depending on the molecular structure and intramolecular processes induced. General principles of the molecular design of systems of this kind are discussed.     

Nickel as a chemical modifier for sensitivity enhancement and fast atomization processes in electrothermal atomic absorption spectrometric determination of cadmium in biological and environmental samples.

A systematic study of the efficiency of protons, Ni, Pd and Th as chemical modifiers for the determination of cadmium by electrothermal atomic absorption spectrometry (ETAAS) using fast temperature programs was made for platform atomization. A comparison was made in terms of the salt type, absorbance-time profiles and elimination of the sodium chloride interference. The results were adapted to develop a method for the ETAAS determination of cadmium in biological and environmental samples. The highest sensitivity to determine cadmium in biological and environmental samples was obtained using nickel (together with protons) as a chemical modifier. The accuracy of the method was tested by the determination of cadmium in different certified reference materials. The best detection limit and the characteristic mass of Cd were found to be 0.03 ng mL(-1) and 0.35 pg, respectively.     

On the Bol Loops

In the present paper, the Bol loops and related groups are studied. We suggest a universal way to construct a Bol loop and find criteria for simplicity and finiteness of such loops.     

Suppression of acoustic noise in the measurements of wall pressure fluctuations

It is shown that, in hydrodynamic noise measurements in the presence of acoustic noise acting upon the pressure fluctuation receiver, spatial filtering methods should provide the best results. Active methods are developed for suppressing the acoustic noise that affects a miniature receiver in the course of turbulent pressure fluctuation measurements. The methods are based on complicating the structure of the measuring transducer by introducing an extra compensating sensing element whose characteristics are identical with those of the main sensing element. The spatial filtering of small-scale turbulent pressure fluctuations by a finite-size electroacoustic transducer is used as the basis for the development of noise-compensated measuring systems, as well as methods of measuring the turbulent pressure fluctuations by receivers with noise compensation. A numerical study of the wave-number filtering of acoustic noise in wall pressure measurements by a noise-compensated receiver is performed.