A Method for Clustering and Screening of Long-dimensional Chemical Data Based on Fingerprints and Similarity Measurements

A method for the treatment of long-dimensional chemical data arrays is presented in this work with the aim of maximising classification models. The method is based on the construction of fingerprints and the subsequent generation of a similarity matrix. The similarity calculation has been modified through a scaling process to take into account different significance shown by the variables. The method was applied to spectral measurements of wines and several aspects were studied, namely: threshold considered in the construction of fingerprints and patterns, weighting factor used for scaling, normalisation method, etc. The application of both Principal Components Analysis and Soft-Independent Modelling of Class Analogies to the similarity matrices gave better classifications of the information than those obtained using original data.     

Electrochemical Synthesis of MII Complexes with a Schiff Base containing an Amido Group. Crystal Structure of a Cobalt(II) Complex with a Reorganised Ligand

M(HL)(H₂O)_n complexes have been obtained by the electrochemical reaction of Fe, Co, Ni, Cu, Zn and Cd anodes with the potentially pentadentate and trianionic asymmetrical Schiff base 3‐aza‐N‐{2‐[1‐aza‐2‐(5‐nitro‐2‐hydroxylphenyl)‐vinyl]phenyl}‐4‐(5‐nitro‐2‐hydroxyphenyl)but‐3‐enamide (H₃L), containing a hard amido donor atom. The complexes have been characterized by elemental analysis, mass spectrometry, IR and ¹H NMR spectroscopies, magnetic measurements and molar conductivities. Co(HL)(H₂O) ( 2 ) has been found to rearrange in DMF solution into a crystallographically solved octahedral complex, CoL¹(H₂O)₂ ( 7 ) [where H₂L¹ is the symmetrical Schiff base ligand N,N′‐(1,2‐phenylene)‐bis(5‐nitro‐3‐hydroxysalicylidenimine)]. A hydrolysis mechanism is discussed to explain this rearrangement.     

Metabonomics: the use of electrospray mass spectrometry coupled to reversed-phase liquid chromatography shows potential for the screening of rat urine in drug development

The application of liquid chromatography/mass spectrometry (LC/MS) followed by principal components analysis (PCA) has been successfully applied to the screening of rat urine following the administration of three candidate pharmaceuticals. With this methodology it was possible to differentiate the control samples from the dosed samples and to identify the components of the mass spectrum responsible for the separation. These data clearly show that LC/MS is a viable alternative, or complementary, technique to proton NMR for metabonomics applications in drug discovery and development.     

Enantioselective Synthesis: Steric and electronic effects of the substrates upon stereoselectivity in the gold(I)-catalyzed aldol reaction with chiral ferrocenylamine ligands,preliminary communication

Enantioselectivity in the gold(I)-catalyzed aldol reaction with chiral ferrocenylamine ligands is strongly dependent upon both the steric and electronic effects of the substrates. In the reaction of pyridine-2-, 3-, and 4-carbaldehydes with ethyl 2-isocyanoacetate, surprisingly and significantly different enantioselectivities were observed in the formation of the cis- and trans-dihydro-oxazoles that must be due to electronic rather than steric effects. The first example of double stereodifferentiation in the gold(l)-catalyzed aldol reaction is reported.     

Interaction of aryldiazonium salts with some schiff-base complexes of cobalt and ruthenium

The interaction of aryldiazonium ions with some Schiff-base complexes of cobalt and ruthenium have been studied. With cobalt, one-electron oxidation of [Co(II)Salen] occurred; with [Co(I)Salen] the corresponding Co(III)-aryl complexes were isolated. In the case of ruthenium oxidation also occurs, [Ru(Salen)(CO)py] gave the corresponding monocation. The results, especially for ruthenium, are in contrast to the stabilisation of both nitrosyl and aryldiazonium adducts in analogous porphyrin complexes.     

Dinuclear Cobalt(III) Complexes Showing a Co2O2 Metallacycle

The heptadentate Schiff base H₃L reacts with cobalt(II) acetate in methanol to form the discrete dinuclear complex Co₂L(OAc)₂(OMe)(H₂O)₂ ( 1 ·2H₂O). The reaction of 1 ·2H₂O with NMe₄OH·5H₂O in methanol gives rise to displacement of the acetate by methanolate groups, yielding Co₂L(OMe)₃(H₂O) ( 2 ·1H₂O). Recrystallizations of the Schiff base, 1 ·2H₂O and 2 ·H₂O in different solvents, produce single crystals of H₃L, 1 ·2.5H₂O and 2 ·2MeOH, respectively. The crystal structures of 1 ·2.5H₂O and 2 ·2MeOH show the cobalt atoms double bridged by and endogenous phenol oxygen atom and an exogenous methanolate oxygen donor, giving rise to Co₂O₂ cores with Co···Co distances of ca. 2.87 Å.     

Determination of the amino acid tryptophan and the biogenic amine tryptamine in foods by the heavy atom induced-room temperature phosphorescence methodology

Very simple and selective methods are presented to determine the amino acid tryptophan (Trp) and the biogenic amine tryptamine (Tryp), both compounds with an indole-type molecular structure by the methodology named Heavy Atom Induced-Room Temperature Phosphorescence (HAI-RTP) which constitutes the first time that HAI-RTP has been used to detect compounds with non-naphthalenic structures in their molecules. Different variables affecting the phosphorescence signal (heavy atom perturber and sodium sulfite concentration) were carefully studied. The analytical curves give a linear dynamic range of 15-100 ng ml(-1) and a detection limit of 4 ng ml(-1) for Trp and 94-400 ng ml(-1) and 28 ng ml(-1) for Tryp. The methods have been successfully applied to the analysis of complex food matrices such as the presence of tryptophan in yoghurt and tryptamine in bottled beer. A single alkaline hydrolysis to release Trp from yoghurt proteins and two methods for extracting Tryp from beer samples are proposed and optimised. A total Trp content of 374 mg of Trp per kg of yoghurt was quantified by the standard addition method of calibration and a recovery of 90% was obtained for 250 ng ml(-1) of Tryp in spiked non-alcoholic beer samples.     

Understanding the catalytic role of flexible chiral δ-amino alcohols: the 1-(2-aminoethyl)norbornan-2-ol model

An empiric first approach to the knowledge about the structural factors influencing the catalytic behavior of conformationally flexible δ-amino-alcohol-based ligands, for the enantioselective addition of dialkylzincs to prochiral carbonyl groups, has been applied using the 1-(2-aminoethyl)norbornan-2-ol moiety as the model chiral system, and the asymmetrically catalyzed addition of diethylzinc to benzaldehyde as the test reaction. For this purpose, a selected small library of seven norbornane-based chiral ligands, bearing well-defined structural variations to allow a comparative study, that is, variation of the relative configuration and steric hindrance at the C(2), C(3) and/or C(7) norbornane positions, has been synthesized and probed in the mentioned test reaction. The experimental results obtained have been rationalized empirically using diastereomeric Noyori-like transition states, demonstrating that the conformational flexibility of the δ-amino-alcohol ligands, contrary to the more studied and rigid β-amino-alcohols, plays a crucial role on the catalytic behavior of such ligands (stereochemical sense and degree of the stereodifferentiation in the asymmetric process), which makes such structural factors, important for the improved design of new related chiral catalysts. In this sense, a robust crude empirical model for the prediction of the catalytic behavior of such δ-amino-alcohol-based ligands is proposed.     

Room-temperature synthesis and conductivity of the pyrochlore type Dy2(Ti1−yZry)2O7 (0?y?1) solid solution

Different compositions in a solid solution of general formula Dy₂(Ti_1−yZr_y)₂O₇, showing high oxygen ion conductivity, have been successfully prepared at room temperature via mechanochemical synthesis. Stoichiometric mixtures of the constituent oxides were dry milled together in a planetary ball mill by using zirconia vials and balls. Chemical changes in the powder mixtures as a function of composition and milling time were followed by X-ray diffraction and revealed that, in all cases and after milling for 19 h, the powder mixtures consisted of a single phase. Electrical properties were measured on sintered pellets as a function of frequency, temperature and zirconium content, revealing an increase in conductivity of more than one order of magnitude for y?0.4, which, as observed in the similar Y₂(Ti_1−yZr_y)₂O₇, has been related with the onset of disordering of the anion sublattice. Despite increasing structural disorder with increasing Zr content, conductivity remains almost constant for y>0.6, reaching a maximum value of ∼5×10⁻³ for Dy₂Zr₂O₇ at 900 °C.     

Porous metal–organic alloys based on soluble coordination cages

Diverse strategies for the preparation of mixed-metal three-dimensional porous solids abound, although many of them lend themselves only moderate levels of tunability. Herein, we report the design and synthesis of surface functionalized permanently microporous coordination cages and their use in the isolation of mixed metal solids. Judicious alkoxide-based ligand functionalization was utilized to tune the solubility of starting copper(ii)-based cages and their resulting compatibility with the mixed-cage approach described here. We further prepared a family of isostructural molybdenum(ii) cages for a subset of the ligands. The preparation of mixed-metal cage solids proceeds under facile conditions where solutions of parent cages are mixed and product phases isolated. A suite of spectroscopic and characterization tools confirm the starting cages are intact in the amorphous product. Finally, we show that utilization of precise ligand functional groups can be used to prepare mixed cage solids that can be easily and cleanly separated into their constituent components through simple solvent washing or solvent extraction techniques.

Surface-functionalized porous coordination cages can be used to create homogeneous mixed-cage alloys with high levels of tunability and processability.