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11.
In this paper we propose a method for carrying out variational transition state theory calculations without first obtaining
a converged minimum-energy path (MEP). We illustrate the method in two ways, first of all by employing an unconverged MEP
and secondly by using a dynamically optimized distinguished reaction path. Preliminary tests of the algorithm for the reactions
OH+H2→H2O+H and C2H5→C2H4+H are very encouraging.
Received: 22 January 1997 / Accepted: 11 March 1997 相似文献
12.
Ignés-Mullol J Claret J Albalat R Crusats J Reigada R Romero MT Sagués F 《Langmuir : the ACS journal of surfaces and colloids》2005,21(7):2948-2955
Preparation of Langmuir monolayers of a mixture of trans- and cis-isomers of an azobenzene derivative, 4-[4-[(4-octylphenyl)azo]phenoxy]butanoic acid, results in the segregation of birefringent trans-isomer domains embedded in an isotropic medium of cis-isomers. Brewster angle microscopy observations allow us to identify different textures inside the domains depending on surface pressure, temperature, and domain size. The evolution of the monolayer in the dark, from initial droplets formed after spreading to a stable stripe texture, is described. The dynamics of domain coalescence and some morphological transitions induced by temperature and surface pressure changes are also discussed. A simple theoretical model is included to supplement some of these experimental observations. 相似文献
13.
Martí M Barsukov LI Fonollosa J Parra JL Sukhanov SV Coderch L 《Langmuir : the ACS journal of surfaces and colloids》2004,20(8):3068-3073
Despite the promising application of liposomes in wool dyeing, little is known about the mechanism of liposome interactions with the wool fiber and dyestuffs. The kinetics of wool dyeing by two dyes, Acid Green 27 (hydrophobic) and Acid Green 25 (hydrophilic), were compared in three experimental protocols: (1) without liposomes, (2) in the presence of phosphatidylcholine (PC) liposomes, and (3) with wool previously treated with PC liposomes. Physicochemical interactions of liposomes with wool fibers were studied under experimental dyeing conditions with particular interest in the liposome affinity to the fiber surface and changes in the lipid composition of the wool fibers. The results obtained indicate that the presence of liposomes favors the retention of these two dyes in the dyeing bath, this effect being more pronounced in case of the hydrophobic dye. Furthermore, the liposome treatment is accompanied by substantial absorption of PC by wool fibers with simultaneous partial solubilization of their polar lipids (more evident at higher temperatures). This may result in structural modification of the cell membrane complex of wool fibers, which could account for a high level of the dye exhaustion observed at the end of the liposome dyeing process. 相似文献
14.
The reaction of several α-amino acids and peptides (containing Gly, L-Ala, L-Leu, L- or DL-Phe, and/or L- or D-Val) with air-diluted nitrogen oxides has been studied to roughly mimic the N-nitrosation of peptide bonds that the contaminated urban air might produce in pulmonary tissues. Most N-protected α-amino acids give practically quantitative yields of N-nitroso derivatives. N-Protected dipeptides afford either dinitrosated peptides, mixtures of di- and mononitrosated compounds, selectively mononitrosated products, or no reaction at all, depending mainly on steric effects. The same trends are observed for some higher peptides. The (po1y)nitrosated Peptides, which retain the chirality of the starting materials, have been characterized by 1H and 13C NMR spectroscopy and are cleaved by pyrrolidine and amino esters under mild conditions to give (new) amides or peptides plus diazo derivatives. 相似文献
15.
Genetic algorithms: A robust scheme for geometry optimizations and global minimum structure problems
A Genetic Algorithm for Geometry Optimizations (GALGO) program has been developed to study the efficiency of this method of finding global minimum structures. Using a semiempirical tight-binding potential, the behavior of different genetic algorithm (GA) operators has been tested for the linear chain isomer of a C8 cluster. An optimum set of parameters for the GA operators is proposed for this problem and afterward is used to obtain the global minimum structure of rare-gas atomic clusters of up to 13 atoms using the 12–6 Lennard-Jones interatomic pair potential. © 1995 by John Wiley & Sons, Inc. 相似文献
16.
Aromatic nucleophilic substitution reaction (S(N)Ar) is one of the most thoroughly studied reactions. Alkylation of nitroaromatics with Grignard reagents via chemical oxidation of the sigma(H)-complexes is the most general method to introduce an alkyl group into a nitroaromatic compound. This approach has considerable drawbacks, especially when more than one nitro group are present in the aromatic ring. In this article, we present an electrochemical approach, which offers a new very selective methodology for obtaining alkyl polynitroaromatic compounds. Different strategies based on the use of tetralkylborate anion as nucleophiles are used so as to increase efficiency and to reduce the drawbacks associated with this reaction. A wide list of dinitro- and trinitro-aromatic compounds are studied, the range of yields obtained being from fair (40%) to excellent (85%). The key to improvement in the process is the use of electrochemical techniques for the oxidation of the mixture sigma(H)-complexes/tetrabutylborate ion. The electroactive character of the nucleophile, which can be oxidized to an alkyl radical, means that the S(N)Ar of the hydrogen polar mechanism is not the only mechanism operating during the electroxidation process, since the hydrogen radical S(N)Ar mechanism is running at the same time. Electrochemical mechanistic studies allow the participation of each mechanism in the global product yield obtained to be quantified. 相似文献
17.
Carlos?AlemánEmail author Jordi?CasanovasEmail author 《Colloid and polymer science》2004,282(6):535-543
A theoretical study based on force-field calculations has been performed to investigate the structural preferences of crystalline even nylons n with large and very large aliphatic segments. Atomistic energy calculations and Monte Carlo simulations were carried out considering the conventional and forms of nylons 10, 12, 18, 24, and 32. Results indicated that the form is the most favored for nylons 10, 12, 18, and 24. However, the structure was unstable for nylon 32, a polymer in which the density of hydrogen bonds is almost negligible. In this case, the arrangement is energetically more favored than the one. 相似文献
18.
Paterson I Aceña JL Bach J Chen DY Coster MJ 《Chemical communications (Cambridge, England)》2003,(4):462-463
Simplified analogues of the potent antimitotic marine macrolide spongistatin 1/altohyrtin A were synthesised and evaluated as growth inhibitory agents against a range of human tumour cell lines, including Taxol-resistant strains, revealing that E-ring dehydration leads to enhanced cytotoxicity at the low picomolar level while truncation of the side-chain at C46 results in a drastic decrease in activity. 相似文献
19.
Kollmar M Steinhagen H Janssen JP Goldfuss B Malinovskaya SA Vázquez J Rominger F Helmchen G 《Chemistry (Weinheim an der Bergstrasse, Germany)》2002,8(14):3103-3114
All possible (eta(3)-allyl)palladium complexes (1-4) of the ligand (4S)-[2-(2'-diphenylphosphanyl)phenyl]-4,5-dihydro-4-(2-propyl)-oxazole (L 1) and eta(3)-allyl ligands with one to three phenyl substituents at the terminal allylic centers were synthesized and characterized by X-ray crystal structure analysis and, with respect to allylic isomers, by NMR investigations. Equilibrium geometries, electronic structures, and relative energies of isomeric complexes were computed by restricted Hartree-Fock (RHF) and density functional theory (DFT) calculations; experimentally determined isomer ratios could be reproduced. The results allowed important conclusions to be drawn regarding the mechanism of Pd-catalyzed asymmetric allylic substitutions. 相似文献
20.
Muñoz-Muriedas J Perspicace S Bech N Guccione S Orozco M Luque FJ 《Journal of computer-aided molecular design》2005,19(6):401-419
Summary The use of a recently proposed hydrophobic similarity index for the alignment of molecules and the prediction of their differences
in biological activity is described. The hydrophobic similarity index exploits atomic contributions to the octanol/water transfer
free energy, which are evaluated by means of the fractional partitioning scheme developed within the framework of the Miertus-Scrocco-Tomasi
continuum model. Those contributions are used to define global and local measures of hydrophobic similarity. The suitability of this computational strategy is examined for two series of compounds
(ACAT inhibitors and 5-HT3 receptor agonists), which are aligned to maximize the global hydrophobic similarity using a Monte Carlo-simulated protocol.
Indeed, the concept of local hydrophobic similarity is used to explore structure–activity relationships in a series of COX-2 inhibitors. Inspection of
the 3D distribution of hydrophobic/hydrophilic contributions in the aligned molecules is valuable to identify regions of very
similar hydrophobicity, which can define pharmacophoric recognition patterns. Moreover, low similar regions permit to identify
structural elements that modulate the differences in activity between molecules. Finally, the quantitative relationships found
between the pharmacological activity and the hydrophobic similarity index points out that not only the global hydrophobicity,
but its 3D distribution, is important to gain insight into the activity of molecules.
J.M.M. and S.P. have contributed equally to this study. 相似文献