N-Terminal Peptide Sequence Repetition Influences the Kinetics of Backbone Fragmentation: A Manifestation of the Jahn-Teller Effect?

Analysis of large (>10,000 entries) databases consisting of high-resolution tandem mass spectra of peptide dications revealed with high statistical significance (P?<?1?10^–3) that peptides with non-identical first two N-terminal amino acids undergo cleavages of the second peptide bond at higher rates than repetitive sequences composed of the same amino acids (i.e., in general AB- and BA- bonds cleave more often than AA- and BB- bonds). This effect seems to depend upon the collisional energy, being stronger at lower energies. The phenomenon is likely to indicate the presence of the diketopiperazine structure for at least some b₂ ⁺ ions. When consisting of two identical amino acids, these species should form through intermediates that have a symmetric geometry and, thus, must be subject to the Jahn-Teller effect that reduces the stability of such systems.

The effect of crystal structure on the thermal reactivity of CL-20 and its C4-bonded explosives

The critical temperature and mechanism functions for thermal decomposition of ε-CL-20, RS-ε-CL-20, α-CL-20, ε-CL-20/C4, and RS-ε-CL-20/C4 were evaluated based on non-isothermal TG data. A two-step mechanism has been found for thermal decomposition of α-CL-20, ε-CL-20/C4, and RS-ε-CL-20/C4, where the initial step is partly controlled by crystal structure of CL-20. The more reasonable mean activation energies could be obtained after peak separation for each individual steps. In fact, the activation energy for the post integrated process is almost equivalent with that of the second step, indicating that the total activation energy at the main decomposition process is dominated by thermolysis of CL-20 molecular. Besides, it has been found that the decomposition of C4 matrix does not affect the decomposition of normal ε-CL-20, resulting in identical activation energy and reaction model. However, the interaction between the C4 matrix and RS-ε-CL-20 is significant especially at the initial stage, where the activation energy of RS-ε-CL-20/C4 was overestimated before peak separation, while the activation energy for the second step due to thermolysis of CL-20 molecular is underestimated. The first decomposition step for α-CL-20, ε-CL-20/C4, and RS-ε-CL-20/C4 could be considered as autocatalytic process (AC model), whereas the second as JMA model, which is also applicable to that of pure ε-CL-20 and RS-ε-CL-20. Moreover, The critical temperatures of thermal explosion (T _b) are obtained as 205.6, 205.5, 209.4, 214.4, and 227.5 °C for α-CL-20, ε-CL-20, RS-ε-CL-20, ε-CL-20/C4, and RS-ε-CL-20/C4, respectively. It proves that the C4 matrix could stabilize ε-CL-20 while the crystal form of CL-20 has little effect on its thermal stability.     

Determination of adsorption heats of individual adsorption complex by combination of microcalorimetry and FTIR spectroscopy

Adsorption of CO as a probe molecule on K-FER zeolites differing in Si/Al ratio was investigated. Successful determination of adsorption heats of individual adsorption complexes formed upon adsorption of CO molecules on K-FER zeolites at 300 K by combination of IR spectroscopy with adsorption microcalorimetry is reported. Adsorption heat of bridged carbonyl complexes, where CO molecule interacts with two nearby extraframework K⁺ cations, was experimentally determined for the first time. It was found that bridged complexes on dual cationic sites exhibit adsorption heat of 34.8 kJ mol^?1, whereas monodentate carbonyls on single isolated K⁺ cation exhibit adsorption heat of only 26.2 kJ mol^?1 and adsorption heat of isocarbonyls was 21.5 kJ mol^?1.     

Kissinger equation versus glass transition phenomenology

The applicability of the Kissinger equation for the evaluation of apparent activation energy corresponding to glass transition kinetics is examined. Theoretically simulated data based on the generally accepted Tool–Narayanaswamy–Moynihan model were used to represent relevant cases of structural relaxation behavior. The values of the apparent activation energy determined by the Kissinger equation were, despite the linearity of the dependencies, in major disagreement with the original values of ?h ^* used for the simulation of the source data. Furthermore, a large dependence of the ?h _Kis ^* evaluation (performed using the Kissinger equation) on the thermal history of the glass was found. The latter represents an unacceptable systematic error in the methodology, implying the incorrectness of the Kissinger equation usage for the evaluation of “glass transition activation energy”. This study addresses the currently widespread (incorrect) usage of the Kissinger equation for the above-mentioned purpose.     

Synthesis and characterisation of PEG-peptide surfaces for proteolytic enzyme detection

Peptide surfaces were obtained by the covalent immobilisation of fluorescently labelled pentapeptides carboxyfluorescein–glycine–arginine–methionine–leucine–glycine, either directly or through a poly(ethylene glycol) (PEG) linker on modified silicon wafers. Each step during the preparation of the peptide surfaces was confirmed by several surface characterisation techniques. Time-of-flight secondary ion mass spectrometry (ToF-SIMS) and X-ray photoelectron spectroscopy were used to determine the surface composition, the wafers philicity was measured by contact angle and atomic force microscopy was used to investigate the surface morphology. Exposure of the peptide surfaces to trypsin resulted in the release of a fluorescently labelled peptide product, which allowed the kinetics of the enzymatic reaction to be followed with the aid of fluorescence spectroscopy. The electrospray ionisation mass spectrometry analysis of the post-digestion solution confirmed that the pentapeptides attached to the solid support undergo specific trypsin hydrolysis at the C-terminus of the arginine residues. Detailed surface analyses before and after the enzyme action was performed using ToF-SIMS. Because of the limited accessibility of the short peptide directly attached to the surface, a quantitative yield of enzymatic hydrolysis was observed only in case when the peptide was bound through the PEG linker. The insertion of the PEG linker increased the number of immobilised peptides and the rate of enzymatic digestion which consequently improved the quality of the enzyme assays. The described approach may be used for different peptide sequences designed for other proteases.

Light Energy Collection in a Porphyrin–Imide–Corrole Ensemble

An assembly consisting of three units, that is, a meso‐substituted corrole ( C3 ), 1,8 naphthaleneimide ( NIE ), and a Zn porphyrin ( ZnP ), has been synthesized. NIE is connected to C3 through a 1,3‐phenylene bridge and to the ZnP unit through a direct C? C bond. The convergent synthetic strategy includes the preparation of a trans‐A₂B‐corrole possessing the imide unit, followed by Sonogashira coupling with a meso‐substituted A₃B‐porphyrin. The photophysical processes in the resulting triad ZnP-NIE-C3 are examined and compared with those of the corresponding C3-NIE dyad and the constituent reference models C3 , NIE , and ZnP . Excitation of the NIE unit in C3-NIE leads to a fast energy transfer of 98 % efficiency to C3 with a rate k_en=7.5×10¹⁰ s^?1, whereas excitation of the corrole unit leads to a reactivity of the excited state identical to that of the model C3 , with a deactivation rate to the ground state k=2.5×10⁸ s^?1. Energy transfer to C3 and to ZnP moieties follows excitation of NIE in the triad ZnP-NIE-C3 . The rates are k_en=7.5×10¹⁰ s^?1 and k_en=2.5×10¹⁰ s^?1 for the sensitization of the C3 and ZnP unit, respectively. The light energy transferred from NIE to Zn porphyrin unit is ultimately funneled to the corrole component, which is the final recipient of the excitation energy absorbed by the different components of the array. The latter process occurs with a rate k_en=3.4×10⁹ s^?1 and 89 % efficiency. Energy transfer processes take place in all cases by a Förster (dipole–dipole) mechanism. The theory predicts quite satisfactorily the rate for the ZnP/C3 couple, where components are separated by about 23 Å, but results in calculated rates that are one to two orders of magnitude higher for the couples NIE/ZnP (D/A) and NIE/C3, which are separated by distances of about 14 and 10 Å, respectively.     

Dispersed Structure of Ethanol‐Gasoline Fuel According to Dynamic Light Scattering Method

The dispersed structures of mixtures of five different gasolines with anhydrous ethanol were investigated by the dynamic light scattering (DLS) method. The aim of the work was to find whether these blends are colloid systems. Influence of different parameters was investigated to verify the results of this research. Ethanol‐gasoline blends were found to be colloid systems with the drop size of 20–150 nm.     

Fast polarisation-insensitive optical shutter supported by backflow in dichroic dye-doped dual-frequency liquid crystal

This paper describes a novel implementation of a dual-frequency liquid crystal optical shutter of the guest–host type. The transmissive state of the filter is obtained by applying a low-frequency electric field that brings the dichroic dye in a homeotropic orientation. The light-absorbing state is realised by a twisted planar configuration for which the absorption is quasi-independent of the polarisation. Switching between the two states occurs in about 1 ms and the devices show no scattering for wavelengths inside or outside the absorption band of the dichroic dye. Simulations and experiments reveal how a twisted state is obtained through the backflow phenomenon.