Extracting the mechanisms and kinetic models of complex reactions from atomistic simulation data

Determining reaction mechanisms and kinetic models, which can be used for chemical reaction engineering and design, from atomistic simulation is highly challenging. In this study, we develop a novel methodology to solve this problem. Our approach has three components: (1) a procedure for precisely identifying chemical species and elementary reactions and statistically calculating the reaction rate constants; (2) a reduction method to simplify the complex reaction network into a skeletal network which can be used directly for kinetic modeling; and (3) a deterministic method for validating the derived full and skeletal kinetic models. The methodology is demonstrated by analyzing simulation data of hydrogen combustion. The full reaction network comprises 69 species and 256 reactions, which is reduced into a skeletal network of 9 species and 30 reactions. The kinetic models of both the full and skeletal networks represent the simulation data well. In addition, the essential elementary reactions and their rate constants agree favorably with those obtained experimentally. © 2019 Wiley Periodicals, Inc.     

A New Application of Carbon Nanotubes Constructing Biosensor

Carbon nanotubes used for constructing biosensor was described for the first time. Single-wall carbon nanotubes (SWNTs) functionalized with carboxylic acid groups were used to immobilize glucose oxidase forming a glucose biosensor. The biosensor response can be determined by amperometric method at a low applied potential (0.40V).     

CoCl_2·6H_2O or LaCl_3·7H_2O Catalyzed Biginelli Reaction. One-Pot Synthesis of 3,4-Dihydropyrimidin-2(1 H)-ones

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Study on fluorescence property of dopamine and determination of dopamine by fluorimetry

In this study, a rapid and sensitive high performance liquid chromatography-inductively coupled plasma-mass spectrometry (HPLC-ICP-MS) determination of primary As species in fish tissues and urine is reported. The separation was achieved on an Altima C18 column with a mobile phase containing citric acid and hexanesulfonic acid (pH 4.5). As(V), monomethylarsonic acid (MMA), As(III), dimethylarsinic acid (DMA) and arsenobetaine (AsB) were separated in less than 4 min with retention times of 83, 99, 130, 166 and 208 s, respectively. This separation of five species in less than 4 min should be attractive to those interested in As speciation. The quantification limits were 44, 56, 94, 64, 66 ng l(-1) and the relative standard deviations (R.S.D.) for day-to-day injections of As at 2 mug l(-1) were 2.0, 3.1, 2.4, 3.8 and 4.0%. The procedure was tested using two reference materials (DORM-2 dogfish muscle tissue, NIST SRM 2670 Freeze-dried Urine, normal level) and then applied to real-world samples. The results obtained demonstrate the suitability of the procedure for screening and quantification at physiological levels of primary As species in biological samples.     

Studies on Micellization of a Polystyrene-b-poly(acrylic acid) Copolymer in Aqueous Media by Pyrene Fluorescence

The aggregation of amphiphilic block copolymers is a crucial phenomenon that controls various applications, and has been extensively treated in the literature1-3. Pyrene is a widely used fluorescence probe for the relative intensities of the vibrational fine structure (five bands) of its fluorescence spectra have been found to be sensitive to the polarity of its environment, the so-called Ham effect4. We report the studies of the aggregation properties of a PS-b-PAA copolymer using pyrene …     

Di‐μ‐bromo‐bis[bromo(di‐2‐pyridylmethanediol‐N,O,N′)­cadmium(II)] trihydrate

Di‐2‐pyridyl ketone reacts with CdBr₂ in water to form the title centrosymmetric dinuclear complex, [Cd₂Br₄(C₁₁H₁₀­N₂O₂)₂]·3H₂O, in which each metal atom is coordinated by an N,O,N′‐chelated di‐2‐pyridyl­methanediol ligand, two bridging bromo ligands and one terminal bromo ligand in a distorted octahedral geometry.     

生物金属与胆固醇相互作用的经验势函数计算

流行病学调查和医学实验均证实，以胆固醇在动脉血管壁沉着、形成病灶及纤维增生使管壁变硬为特征的动脉粥样硬化（AS），与血中某些金属元素的水平密切相关＊．一些临床医学观测报道了冠心病患者血中金属元素铜、锌、铬、钢等的水平与胆固醇含量变化的关系［2－6］，以期通过改善人体内微量元素的失调来抑制AS的发生和发展．AS患者血中生物金属铜、锌、铬、锅水平与胆固醇含量有关，可能意味着两者存在某种相互作用制约关系．本文通过金属一胆固醇间、胆固醇分子间、受金属离子影响的胆固醇分子间的各种模型构造，选用恰当的经验势函数…     

Development of a ReaxFF reactive force field for ettringite and study of its mechanical failure modes from reactive dynamics simulations

Ettringite is a hexacalcium aluminate trisulfate hydrate mineral that forms during Portland cement hydration. Its presence plays an important role in controlling the setting rate of the highly reactive aluminate phases in cement paste and has also been associated with severe cracking in cured hardened cement. To understand how it forms and how its properties influence those of hardened cement and concrete, we have developed a first-principles-based ReaxFF reactive force field for Ca/Al/H/O/S. Here, we report on the development of this ReaxFF force field and on its validation and application using reactive molecular dynamics (RMD) simulations to characterize and understand the elastic, plastic, and failure response of ettringite at the atomic scale. The ReaxFF force field was validated by comparing the lattice parameters, pairwise distribution functions, and elastic constants of an ettringite crystal model obtained from RMD simulations with those from experiments. The predicted results are in close agreement with published experimental data. To characterize the atomistic failure modes of ettringite, we performed stress-strain simulations to find that Ca-O bonds are responsible for failure of the calcium sulfate and tricalcium aluminate (C3A) column in ettringite during uniaxial compression and tension and that hydrogen bond re-formation during compression induces an increase in plastic strain beyond the material's stress-strain proportionality limit. These results provide essential insight into understanding the mechanistic role of this mineral in cement and concrete degradation, and the ReaxFF potential developed in this work serves as a fundamental tool to further study the kinetics of hydration in cement and concrete.     

Controllable alignment of liquid crystals based on the surface relief gratings from a photocross-linkable organic monomer

The orientational control of liquid crystal (LC) molecules is essential for high-quality liquid crystal displays, and the photo-induced surface relief grating (SRG) is a facile and effective non-contact process. Here, SRGs with different period and depth were prepared with a photocross-linkable organic monomer 4-propyldiphenylacetylenecarboxylic acid cinnamyl ester (PDACE), and the LC alignment induced by SRG was studied. It is found that both the surface topography and the chemical nature of the surface are responsible for the LC alignment, which is strongly dependent on the groove geometry of the gratings. Furthermore, the patterned LC cell was fabricated with the patterned SRG surface. These results demonstrate that the planar, perpendicular and patterned orientations of LC can be easily photo-controllably obtained with PDACE, which have important applications in optical devices.     

Disk-shaped Symmetric Hexa-substituted Triphenylene Derivatives: Synthesis,Physical Properties and Self-assembly

A series of triphenylene derivatives with six symmetric substituents was synthesized from hexabromotriphenylene. The synthesis was conducted by six-fold palladium-catalyzed Hagihara-Sonogashira cross- coupling reactions to yield the hexa-alkynyl substituted triphenylene derivatives of HTP1, HTP2, HTP3 and HTP4. The six symmetric substituents can not only endow the triphenylene the longer π-conjugated range, but also increase the solubility of the compounds. Their photophysical, electrochemical, thermal properties were investigated respectively. With the comparison of their properties, the structure-property relationships were established which demonstrated the influences of different substituents on the electronic nature and the mesomorphic phase of these disk-shaped molecules. In addition, with the scanning electron microscopy(SEM) and polarized optical microscopy(POM) characterization, the self-assembly behaviors of the compounds were also investigated.