NIR Mega‐Stokes Fluorophores for Bioorthogonal Labeling and Energy Transfer Systems–An Efficient Quencher for Daunomycin

A set of new azide‐ and alkyne‐bearing lepidinium‐based fluorophores were synthesized for bioorthogonal labeling schemes. These fluorescent dyes all show large Stokes‐shifts with emission maxima in the near‐infrared (NIR) region of the electromagnetic spectrum. The applicability of these dyes in the construction of energy‐transfer systems was tested using one of these new fluorescent tags and daunomycin (Dau), an anticancer drug with fluorescent features. These daunomycin conjugates are the very first examples of fluorescently modulated constructs of this anticancer agent. The dually labeled architectures proved that the applied fluorescent dye can be utilized as an efficient quencher for daunomycin. Enzymatic cleavage of a dually labeled enzyme substrate resulted in full recovery of the fluorescence of daunomycin. Such fluorescently modulated Dau conjugates can provide useful information for the mechanism of action of Dau‐regulated cell death processes.     

Partitions with certain intersection properties

Partitions of the n ‐element set are considered. A family of m such partitions is called an ( n, m, k )‐pamily, if there are two classes for any pair of partitions whose intersection has at least k elements, and any pair of elements is in the same class for at most two partitions. Let f ( n, k ) denote the maximum of m for which an ( n, m, k )‐pamily exist. A constructive lower bound is given for f ( n, k ), which is compared with the trivial upper bound. Copyright © 2011 Wiley Periodicals, Inc. J Combin Designs 19:345‐354, 2011     

A validated method for measurement of serum total,serum free,and salivary cortisol,using high-performance liquid chromatography coupled with high-resolutionESI-TOF mass spectrometry

Blood cortisol level is routinely analysed in laboratory medicine, but the immunoassays in widespread use have the disadvantage of cross-reactivity with some commonly used steroid drugs. Mass spectrometry has become a method of increasing importance for cortisol estimation. However, current methods do not offer the option of accurate mass identification. Our objective was to develop a mass spectrometry method to analyse salivary, serum total, and serum free cortisol via accurate mass identification. The analysis was performed on a Bruker micrOTOF high-resolution mass spectrometer. Sample preparation involved protein precipitation, serum ultrafiltration, and solid-phase extraction. Limit of quantification was 12.5 nmol L^?1 for total cortisol, 440 pmol L^?1 for serum ultrafiltrate, and 600 pmol L^?1 for saliva. Average intra-assay variation was 4.7 %, and inter-assay variation was 6.6 %. Mass accuracy was <2.5 ppm. Serum total cortisol levels were in the range 35.6–1088 nmol L^?1, and serum free cortisol levels were in the range 0.5–12.4 nmol L^?1. Salivary cortisol levels were in the range 0.7–10.4 nmol L^?1. Mass accuracy was equal to or below 2.5 ppm, resulting in a mass error less than 1 mDa and thus providing high specificity. We did not observe any interference with routinely used steroidal drugs. The method is capable of specific cortisol quantification in different matrices on the basis of accurate mass identification.     

Tailoring GaN semiconductor surfaces with biomolecules

Functionalization of semiconductors constitutes a crucial step in using these materials for various electronic, photonic, biomedical, and sensing applications. Within the various possible approaches, selection of material-binding biomolecules from a random biological library, based on the natural recognition of proteins or peptides toward specific material, offers many advantages, most notably biocompatibility. Here we report on the selective functionalization of GaN, an important semiconductor that has found broad uses in the past decade due to its efficient electroluminescence and pronounced chemical stability. A 12-mer peptide ("GaN_probe") with specific recognition for GaN has evolved. The subtle interplay of mostly nonpolar hydrophobic and some polar amino acidic residues defines the high affinity adhesion properties of the peptide. The interaction forces between the peptide and GaN are quantified, and the hydrophobic domain of the GaN_probe is identified as primordial for the binding specificity. These nanosized binding blocks are further used for controlled placement of biotin-streptavidin complexes on the GaN surface. Thus, the controlled grow of a new, patterned inorganic-organic hybrid material is achieved. Tailoring of GaN by biological molecules can lead to a new class of nanostructured semiconductor-based devices.     

Preparative-scale chromatography of ecdysteroids of Serratula wolffli andrae

Numerous ecdysteroids are isolated from the herb of Serratula wolffii Andrae, a cultivated plant. The isolation procedure includes a variety of low-pressure liquid chromatography, thin-layer chromatography (TLC), gel chromatography, and high-performance liquid chromatography (HPLC) methods. The progress of separation is monitored by TLC, and the final proof of purity is carried out by HPLC. The isolation process involves the removal of proteins, flavonoids, chlorophylls, other sterines, etc. The purification also includes the separation of the target ecdysteroids from each other. Isolation of the pure compounds requires 2-8 chromatographic steps. The consecutive steps are based on the different physicochemical properties of the ecdysteroids. In some cases, a special peak-cut method employing a flush of dichloromethane into the dichloromethane-isopropanol-water mobile phase is used. This flush of dichloromethane leads to an almost perfect separation of otherwise unresolved peaks. Two ecdysteroids, 25-hydroxydacryhainansterone and 14-epi-20-hydroxyecdysone, are identified as natural products for the first time. The structure-chiroptical relationships for some ecdysteroids are also discussed.     

Representations of Shavitt Graphs Within the Graphical Unitary Group Approach

The Shavitt graph is a visual representation of a distinct row table (DRT) within the graphical unitary group approach. The DRT is a compact representation of the entire configuration state function expansion space within a molecular electronic structure calculation. Each node of the graph is associated with an integer triple (a _k,b _k,c _k). These integers may be mapped to other quantum numbers, including the number of orbitals, number of electrons, and spin quantum number, and used to display Shavitt graphs in various ways that emphasize different aspects of the expansion space or that reveal different aspects of computed wave functions. The features of several graph density plots are discussed, including electron–hole symmetries and the bonding–antibonding wave function character. © 2019 Wiley Periodicals, Inc.     

Comparison of quantitative performance of three fluorescence labels in CE/LIF analysis of aspartate and glutamate in brain microdialysate

Three different fluorescent tags have been compared for the quantitative analysis of aspartate and glutamate in brain microdialysate samples. Separation conditions have been optimized to achieve short analysis time using reversed polarity separation in coated capillary. Method validation has revealed similar quantification limit of 0.1?μM of analytes using either of the labels, although LOD values were different: 7.8-9.8?nM for 4-fluoro-7-nitro-2,1,3-benzoxadiazole, 3.5?nM for fluorescein-5-isothiocyanate and 1.3-1.5?nM for carboxyfluorescein succinimidyl ester derivatives. The almost two orders of magnitude difference between LOD and LOQ values is likely due to the unreliable derivatization reaction at low sample concentration. Based on the superior stability, FITC derivatization was used for the analysis of biological samples. The applicability of the method has been demonstrated by analyzing basal and potassium evoked amino acid concentrations in individual brain microdialysate samples.     

Coordination of methanol clusters to benzene: a computational study

Benzene-methanol cluster structures were investigated with theoretical chemistry methods to describe the microsolvation of benzene and the benzene-methanol azeotrope. Benzene-methanol (MeOH) clusters containing up to six methanol molecules have been calculated by ab initio [MP2/6-311++G(d,p)//MP2/6-31+G(d,p) + BSSE correction] method. The BSSE was found quite large with this basis set, hence, different extrapolation schemes in combination with the aug-cc-pVxZ basis sets have been used to estimate the complete basis set limit of the MP2 interaction energy [ΔE(MP2/CBS)]. For smaller clusters, n ≤ 3, DFT procedures (DFTB+, MPWB1K, M06-2X) have also been applied. Geometries obtained for these clusters by M06-2X and MP2 calculations are quite similar. Based on the MP2/CBS results, the most stable C(6)H(6)(MeOH)(3) cluster is characterized by a hydrogen bonded MeOH trimer chain interacting with benzene via π···H-O and O···H-C(benzene) hydrogen bonds. Larger benzene-MeOH clusters with n ≥ 4 consist of cyclic (MeOH)(n) subclusters interacting with benzene by dispersive forces, to be denoted by C(6)H(6) + (MeOH)(n). Interaction energies and cooperativity effects are discussed in comparison with methanol clusters. Besides MP2/CBS calculations, for selected larger clusters the M06-2X/6-311++G(d,p)//M06-2X/6-31+G(d,p) procedure including the BSSE correction was also used. Interaction energies obtained thereby are usually close to the MP2/CBS limit. To model the benzene-MeOH azeotrope, several structures for (C(6)H(6))(2)(MeOH)(3) clusters have been calculated. The most stable structures contain a tilted T-shaped benzene dimer interacting by π···H-O and O···H-C (benzene) hydrogen bonds with a (MeOH)(3) chain. A slightly less negative interaction energy results for a parallel displaced benzene sandwich dimer with a (MeOH)(3) chain atop of one of the benzene molecules.     

Radiation induced degradation of pharmaceutical residues in water: Chloramphenicol

The γ-radiolytic degradation of chloramphenicol (CPL) was investigated in 0.1–1 mmol dm^?3 aqueous solutions at various radiation conditions. The destruction of CPL was monitored by UV–vis spectrophotometric method through the decrease in the intensity of the absorbance band at 276 nm. LC-MS/MS was used to identify the degradation products. Results indicate that ^?OH can add onto the CPL aromatic ring or can abstract H-atom from the side chain. The reductive dechlorination of CPL was also studied based on the reaction of e_aq^? with CPL. In 0.1 mmol dm^?3 solution above 2.5 kGy dose complete CPL degradation was achieved. In the presence of dissolved oxygen at relatively low dose, various oxidation products were observed. In the presence of tertiary butanol radical scavenger tertiary butanol group containing products were also detected. The toxicity increased as a function of dose to 1.0 kGy. At doses higher than 1.0 kGy the toxicity decreased continuously due to further degradation. It was also demonstrated that the O₂^??/HO₂^? pair has low reactivity in CPL solution.     

External field induced tricritical phenomenon in the isotropicnematic phase transition of hard non-spherical particle systems

The effect of static external field is studied on the isotropic–nematic phase transition of a system of hard non-spherical particles (rods or platelets) with negative anisotropic polarizability (susceptabilities). On the basis of Onsager theory, the phase coexistence curve is calculated numerically without any approximation. It is found that a weakly ordered nematic phase (uniaxial planar) is in coexistence with a highly ordered biaxial nematic phase which ends at a tricritical point. In the limit of infinite field strength, the orientations of the particles are confined in a plane perpendicular to the field and continuous isotropic–nematic phase transition takes place.