An XPS study on the surface reduction of V2O5(0 0 1) induced by Ar ion bombardment

The effect of the irradiation with Al Kα X-rays during an XPS measurement upon the surface vanadium oxidation state of a fresh in vacuum cleaved V₂O₅(0 0 1) crystal was examined. Afterwards, the surface reduction of the V₂O₅(0 0 1) surface under Ar⁺ bombardment was studied. The degree of reduction of the vanadium oxide was determined by means of a combined analysis of the O1s and V2p photoelectron lines. Asymmetric line shapes were needed to fit the V³⁺2p photolines, due to the metallic character of V₂O₃ at ambient temperature. Under Ar⁺ bombardment, the V₂O₅(0 0 1) crystal surface reduces rather fast towards the V₂O₃ stoichiometry, after which a much slower reduction of the vanadium oxide occurs.     

Large eddy simulation of channel flow with and without periodic constrictions using the explicit algebraic subgrid-scale model

We analyse the performance of the explicit algebraic subgrid-scale (SGS) stress model (EASSM) in large eddy simulation (LES) of plane channel flow and the flow in a channel with streamwise periodic hill-shaped constrictions (periodic hill flow) which induce separation. The LESs are performed with the Code_Saturne which is an unstructured collocated finite volume solver with a second-order spatial discretisation suitable for LES of incompressible flow in complex geometries. At first, performance of the EASSM in LES of plane channel flow at two different resolutions using the Code_Saturne and a pseudo-spectral method is analysed. It is observed that the EASSM predictions of the mean velocity and Reynolds stresses are more accurate than the conventional dynamic Smagorinsky model (DSM). The results with the pseudo-spectral method were, in general, more accurate. In the second step, LES with the EASSM of flow separation in the periodic hill flow is compared to LES with the DSM, no SGS model and a highly resolved LES data using the DSM. Results show that the mean velocity profiles, the friction and pressure coefficients, the length and shape of the recirculation bubble, as well as the Reynolds stresses are considerably better predicted by the EASSM than the DSM and the no SGS model simulations. It was also observed that in some parts of the domain, the resolved strain-rate and SGS shear stress have the same sign. The DSM cannot produce a correct SGS stress in this case, in contrast to the EASSM.     

Assembly of a Complex Branched Oligosaccharide by Combining Fluorous‐Supported Synthesis and Stereoselective Glycosylations using Anomeric Sulfonium Ions

There is an urgent need to develop reliable strategies for the rapid assembly of complex oligosaccharides. This paper presents a set of strategically selected orthogonal protecting groups, glycosyl donors modified by a (S)‐phenylthiomethylbenzyl ether at C‐2, and a glycosyl acceptor containing a fluorous tag, which makes it possible to rapidly prepare complex branched oligosaccharides of biological importance. The C‐2 auxiliary controlled the 1,2‐cis anomeric selectivity of the various galactosylations. The orthogonal protecting groups, 2‐naphthylmethyl ether (Nap) and levulinic ester (Lev), made it possible to generate glycosyl acceptors and allowed the installation of a crowded branching point. After the glycosylations, the chiral auxiliary could be removed using acidic conditions, which was compatible with the presence of the orthogonal protecting groups Lev and Nap, thereby allowing the efficient installation of 1,2‐linked glycosides. The light fluorous tag made it possible to purify the compounds by a simple filtration method using silica gel modified by fluorocarbons. The set of building blocks was successfully employed for the preparation of the carbohydrate moiety of the GPI anchor of Trypanosoma brucei, which is a parasite that causes sleeping sickness in humans and similar diseases in domestic animals.     

Development of inositol-based antagonists for the D-myo-inositol 1,4,5-trisphosphate receptor

The syntheses of four D-myo-inositol 1,4,5-trisphosphate (InsP(3)) derivatives, incorporating phosphate bioisosteres at the 5-position, are reported. The methyl phosphate ester and sulfate derivatives retain InsP(3) receptor (InsP(3)R) agonist activity; the compounds that possess a methylphosphonate or a carboxymethyl moiety are InsP(3)R antagonists.     

Polymer networks via cationic ring-opening polymerization

Three methods for the formation of polymer networks from bifunctionally growing polymers obtained by cationic ring-opening polymerization are described. The first method is based on the irreversible inter-molecular termination reaction of thietane polymerizations. Starting from bifunctionally living poly(THF) a new kind of polymer structure consisting of ABA block copolymers with cross-linked A-segments is obtained. The second method is the direct coupling of active species with primary amines or ammonia. The third method consists in transformation of the living end groups of poly(THF) into triethoxysilane end groups, followed by cross-linking by addition of water and a trace of acid.     

Chemical Synthesis of a Glycopeptide Derived from Skp1 for Probing Protein Specific Glycosylation

Skp1 is a cytoplasmic and nuclear protein, best known as an adaptor of the SCF family of E3‐ubiquitin ligases that label proteins for their degradation. Skp1 in Dictyostelium is posttranslationally modified on a specific hydroxyproline (Hyp) residue by a pentasaccharide, which consists of a Fucα1,2‐Galβ‐1,3‐GlcNAcα core, decorated with two α‐linked Gal residues. A glycopeptide derived form Skp1 was prepared to characterize the α‐galactosyltransferase (AgtA) that mediates the addition of the α‐Gal moieties, and to develop antibodies suitable for tracking the trisaccharide isoform of Skp1 in cells. A strategy was developed for the synthesis of the core trisaccharide‐Hyp based on the use of 2‐naphthylmethyl (Nap) ethers as permanent protecting groups to allow late stage installation of the Hyp moiety. Tuning of glycosyl donor and acceptor reactivities was critical for achieving high yields and anomeric selectivities of glycosylations. The trisaccharide‐Hyp moiety was employed for the preparation of the glycopeptide using microwave‐assisted solid phase peptide synthesis. Enzyme kinetic studies revealed that trisaccharide‐Hyp and trisaccharide‐peptide are poorly recognized by AgtA, indicating the importance of context provided by the native Skp1 protein for engagement with the active site. The trisaccharide‐peptide was a potent immunogen capable of generating a rabbit antiserum that was highly selective toward the trisaccharide isoform of full‐length Skp1.     

Controlled Multi‐functionalization Facilitates Targeted Delivery of Nanoparticles to Cancer Cells

A major objective of nanomedicine is to combine in a controlled manner multiple functional entities into a single nanoscale device to target particles with great spatial precision, thereby increasing the selectivity and potency of therapeutic drugs. A multifunctional nanoparticle is described for controlled conjugation of a cytotoxic drug, a cancer cell targeting ligand, and an imaging moiety. The approach is based on the chemical synthesis of polyethylene glycol that at one end is modified by a thioctic acid for controlled attachment to a gold core. The other end of the PEG polymers is modified by a hydrazine, amine, or dibenzocyclooctynol moiety for conjugation with functional entities having a ketone, activated ester, or azide moiety, respectively. The conjugation approach allowed the controlled attachment of doxorubicin through an acid‐labile hydrazone linkage, an Alexa Fluor dye through an amide bond, and a glycan‐based ligand for the cell surface receptor CD22 of B‐cells using strain promoted azide‐alkyne cycloaddition. The incorporation of the ligand for CD22 led to rapid entry of the nanoparticle by receptor‐mediated endocytosis. Covalent attachment of doxorubicin via hydrazone linkage caused pH‐responsive intracellular release of doxorubicin and significantly enhanced the cytotoxicity of nanoparticles. A remarkable 60‐fold enhancement in cytotoxicity of CD22 (+) lymphoma cells was observed compared to non‐ targeted nanoparticles.     

Biomolecular interaction monitoring of autoantibodies by scanning surface plasmon resonance microarray imaging

A new commercial surface plasmon resonance (SPR) imaging analysis system with a novel SPR dip angle scanning principle allows the measurement, without the need for labeling, of the exact SPR dip angle. With this system hundreds of biomolecular interactions can be monitored on microarrays simultaneously and with great precision. The potency of this system is demonstrated by automatically monitoring the interactions between citrullinated peptides and serum autoantibodies of 50 rheumatoid arthritis (RA) patients and 29 controls in a single step. The smallest antibody concentration that could be measured in this experimental setup was 0.5 pM.