Ultrafast and bias-free all-optical wavelength conversion using III-V-on-silicon technology

Using a 7.5 μm diameter disk fabricated with III-V-on-silicon fabrication technology, we demonstrate bias-free all-optical wavelength conversion for non-return-to-zero on-off keyed pseudorandom bit sequence (PRBS) data at the speed of 10 Gbits/s with an extinction ratio of more than 12 dB. The working principle of such a wavelength converter is based on free-carrier-induced refractive index modulation in a pump-probe configuration. We believe it to be the first bias-free on-chip demonstration of all-optical wavelength conversion using PRBS data. All-optical gating measurements in the pump-probe configuration with the same device have revealed that it is possible to achieve wavelength conversion beyond 20 Gbits/s.     

Pseudo-likelihood methodology for partitioned large and complex samples

Large data sets, either coming from a large number of independent replications, or because of hierarchies in the data with large numbers of within-unit replication, may pose challenges to the data analyst up to the point of making conventional inferential methods, such as maximum likelihood, prohibitive. Based on general pseudo-likelihood concepts, we propose a method to partition such a set of data, analyze each partition member, and properly combine the inferences into a single one. It is shown that the method is fully efficient for independent partitions, while with dependent sub-samples efficiency is sometimes but not always equal to one. It is argued that, for important realistic settings, efficiency is often very high. Illustrative examples enhance insight in the method’s operation, while real-data analysis underscores its power for practice.     

SNARE derived peptide mimic inducing membrane fusion

SNARE proteins mediate membrane fusion between synaptic vesicles and the plasma membrane. A minimized peptide SNARE model system with reduced complexity was introduced combining the native SNARE transmembrane (TMD) and linker domains with artificial coiled-coil forming peptides. Specific membrane fusion initiated by coiled-coil recognition was shown by lipid and content mixing vesicle assays.     

A generalization of inverse distance weighting and an equivalence relationship to noise-free Gaussian process interpolation via Riesz representation theorem

In this paper, we show the relationship between two seemingly unrelated approximation techniques. On the one hand, a certain class of Gaussian process-based interpolation methods, and on the other hand inverse distance weighting, which has been developed in the context of spatial analysis where there is often a need for interpolating from irregularly spaced data to produce a continuous surface. We develop a generalization of inverse distance weighting and show that it is equivalent to the approximation provided by the class of Gaussian process-based interpolation methods. The equivalence is established via an elegant application of Riesz representation theorem concerning the dual of a Hilbert space. It is thus demonstrated how a classical theorem in linear algebra connects two disparate domains.     

Approximate Central Limit Theorems

We refine the classical Lindeberg–Feller central limit theorem by obtaining asymptotic bounds on the Kolmogorov distance, the Wasserstein distance, and the parameterized Prokhorov distances in terms of a Lindeberg index. We thus obtain more general approximate central limit theorems, which roughly state that the row-wise sums of a triangular array are approximately asymptotically normal if the array approximately satisfies Lindeberg’s condition. This allows us to continue to provide information in nonstandard settings in which the classical central limit theorem fails to hold. Stein’s method plays a key role in the development of this theory.     

Surface dipoles and work functions of alkylthiolates and fluorinated alkylthiolates on Au(111)

We study the dipole formation at the surface formed by -CH(3) and -CF(3) terminated short-chain alkylthiolate monolayers on Au(111). In particular, we monitor the change in work function upon chemisorption using density functional theory calculations. We separate the surface dipole into two contributions, resulting from the gold-adsorbate interaction and the intrinsic dipole of the adsorbate layer, respectively. The two contributions turn out to be approximately additive. Adsorbate dipoles are defined by calculating dipole densities of free-standing molecular monolayers. The gold-adsorbate interaction is, to a good degree, determined by the Au-S bond only. This bond is nearly apolar and its contribution to the surface dipole is relatively small. The surface dipole of the self-assembled monolayer is then dominated by the intrinsic dipole of the thiolate molecules. Alkylthiolates increase the work function of Au(111), whereas fluorinated alkylthiolates decrease it.     

Introduction: Vagueness and Ontology

The article introduces a special issue of the journal Metaphysica on vagueness and ontology. The conventional view has it that all vagueness is semantic or representational. Russell, Dummett, Evans and Lewis, inter alia, have argued that the notion of “ontic” or “metaphysical” vagueness is not even intelligible. In recent years, a growing minority of philosophers have tried to make sense of the notion and have spelled it out in various ways. The article gives an overview and relates the idea of ontic vagueness to the unquestioned phenomenon of fuzzy spatiotemporal boundaries and to the associated “problem of the many”. It briefly discusses the question of whether ontic vagueness can be spelled out in terms of “vague identity”, emphasizes the often neglected role of the difference between sortal and non-sortal ontologies and suggests a deflationary answer to the ill-conceived question of whether the “ultimate source” of vagueness lies either in language or in the world.     

Protecting‐Group‐Controlled Enzymatic Glycosylation of Oligo‐N‐Acetyllactosamine Derivatives

We describe a chemoenzymatic strategy that can give a library of differentially fucosylated and sialylated oligosaccharides starting from a single chemically synthesized tri‐N‐acetyllactosamine derivative. The common precursor could easily be converted into 6 different hexasaccharides in which the glucosamine moieties are either acetylated (GlcNAc) or modified as a free amine (GlcNH₂) or Boc (GlcNHBoc). Fucosylation of the resulting compounds by a recombinant fucosyl transferase resulted in only modification of the natural GlcNAc moieties, providing access to 6 selectively mono‐ and bis‐fucosylated oligosaccharides. Conversion of the GlcNH₂ or GlcNHBoc moieties into the natural GlcNAc, followed by sialylation by sialyl transferases gave 12 differently fucosylated and sialylated compounds. The oligosaccharides were printed as a microarray that was probed by several glycan‐binding proteins, demonstrating that complex patterns of fucosylation can modulate glycan recognition.     

Fluorescence monitoring of microchip capillary electrophoresis separation with monolithically integrated waveguides

Using femtosecond laser writing, optical waveguides were monolithically integrated into a commercial microfluidic lab-on-a-chip device, with the waveguides intersecting a microfluidic channel. Continuous-wave laser excitation through these optical waveguides confines the excitation window to a width of 12 microm, enabling high-resolution monitoring of the passage of different types of fluorescent analytes when migrating and being separated in the microfluidic channel by microchip capillary electrophoresis. Furthermore, we demonstrate on-chip-integrated waveguide excitation and detection of a biologically relevant species, fluorescently labeled DNA molecules, during microchip capillary electrophoresis. Well-controlled plug formation as required for on-chip integrated capillary electrophoresis separation of DNA molecules, and the combination of waveguide excitation and a low limit of detection, will enable monitoring of extremely small quantities with high spatial resolution.