Multiple time scale analysis of two models for the peroxidase-oxidase reaction

A multiple time scale analysis of two four-variable models of the peroxidase-oxidase reaction, the DOP, and the Olsen model, is carried out. It is shown that autonomous limit cycle oscillations are exhibited by the fast subsets of these two models, but only in certain regions of parameter space, confirming the prior suggestion that the slow variable (NADH) is not essential for oscillatory behavior. However, it is found that the slow variable is essential for oscillatory behavior over other ranges of parameter values, and is always essential for complex oscillatory and chaotic behavior. This latter conclusion is based on a study involving driving the fast subset with a sinusoidally varying (NADH). This study suggests the level of coupling between fast and slow variables of an autonomous system necessary to cause the chaos observed in the DOP model. Further study of the driven system allows for the identification of a natural period of the nonoscillatory but bistable fast subsystem and a set of rules for applying a parametric driving in such a way as to generate a more complete Farey sequence from a truncated Farey sequence. These conclusions are used to compare the very similar DOP and Olsen models, which, nevertheless, exhibit quite different Farey sequences and routes to chaos. (c) 1995 American Institute of Physics.     

Error estimates in the determination of rigid body displacements in protein crystals

We report the estimation of random errors in the refinement of the rigid body displacements of the -helices of the enzyme 6-phosphogluconate dehydrogenase. Least-squares refinement of the TLS parameters of the helices has been carried out using X-ray reflection data of 2.1 Å resolution, resulting in anR-factor of 19.5%. Standard deviations were estimated from the normal matrix. The results show that the translational mean-square displacements of nearly all the helices are significant at this resolution. However the libration parameters are only significant when the helices have at least four turns. Screw-rotation tensor values cannot be determined at this resolution.     

The invertibility of the product of unbounded Toeplitz operators

In this note I give necessary and sufficient conditions on outer functionsf andg for the operator to be bounded and invertible on H². I also discuss the relationship of this question to two open questions in operator theory and weighted norm inequalities.     

Moment closure hierarchies for kinetic theories

This paper presents a systematicnonperturbative derivation of a hierarchy of closed systems of moment equations corresponding to any classical kinetic theory. The first member of the hierarchy is the Euler system, which is based on Maxwellian velocity distributions, while the second member is based on nonisotropic Gaussian velocity distributions. The closure proceeds in two steps. The first ensures that every member of the hierarchy is hyperbolic, has an entropy, and formally recovers the Euler limit. The second involves modifying the collisional terms so that members of the hierarchy beyound the second also recover the correct Navier-Stokes behavior. This is achieved through the introduction of a generalization of the BGK collision operator. The simplest such system in three spatial dimensions is a 14-moment closure, which also recovers the behavior of the Grad 13-moment system when the velocity distributions lie near local Maxwellians. The closure procedure can be applied to a general class of kinetic theories.     

Global (and local) analyticity for second order operators constructed from rigid vector fields on products of tori

We prove global analytic hypoellipticity on a product of tori for partial differential operators which are constructed as rigid (variable coefficient) quadratic polynomials in real vector fields satisfying the Hörmander condition and where satisfies a ``maximal' estimate. We also prove an analyticity result that is local in some variables and global in others for operators whose prototype is

(with analytic , naturally, but not identically zero). The results, because of the flexibility of the methods, generalize recent work of Cordaro and Himonas in [4] and Himonas in [8] which showed that certain operators known not to be locally analytic hypoelliptic (those of Baouendi and Goulaouic [1], Hanges and Himonas [6], and Christ [3]) were globally analytic hypoelliptic on products of tori.

     

Chemistry of 1-Alkoxy-1-glycosyl Radicals: The Manno- and Rhamnopyranosyl Series. Inversion of alpha- to beta-Pyranosides and the Fragmentation of Anomeric Radicals

The formation and stereoselective quenching of 1-mannopyranosyl radicals by a tributyltin hydride-mediated intramolecular 1,5-hydrogen abstraction sequence is described. A competing process is 1,4-hydrogen atom abstraction leading principally to glucopyran-2-ulosides. Fragmentation of the anomeric radical resulting in the formation of ring opened products is a problem in certain series. The chemistry is dictated to a considerable extent by the nature of the protecting groups employed with the 4,6-benzylidene series and, for rhamnose, the Ley 3,4-dispiroketal, being particularly susceptible to the 1,4-hydrogen atom abstraction but less to the fragmentation. Photochemical conditions are described, in which these side reactions are practically eliminated, and applied to the inversion of an alpha- to a beta-mannoside in a disaccharide.     

LP modeling languages for personal computers: A comparison

The purpose of this paper is to compare and contrast the modeling capabilities of seven algebraic modeling languages (ML) available today, namely, AMPL, GAMS, LINGO, LPL, MPL, PC-PROG and XPRESS-LP. In general, these MLs do an excellent job of providing an interface with which the modeler can specify an algebraically formatted linear program (LP). That is, each ML provides a substantial improvement in time and convenience over the matrix generator/report writers of the last few decades. Further, each of the MLs provides: (1) significant flexibility in model specification, instantiation and modification, (2) effective and efficient conversion from algebraic to solver format, and (3) an understandable and, for the most part, self-documenting model representation. In addition, each of the MLs is constantly being updated and upgraded to provide additional capabilities sought by practitioners and users. However, as shown in the fifteen tables provided in the body of this paper, each ML has its own set of competitive advantages. For example, the most integrated environments (i.e. those integrating the modeling language with a full-screen editor, data import capabilities and a solver) are provided by LINGO and PC-PROG. The most user-friendly interfaces are provided by MPL and PC-PROG, both of which provide window-based interfaces to create models and pop-up windows to display error messages; MPL also uses pull-down menus to specify various operations, whereas PC-PROG uses function keys for operational control. Package costs are led by a current (March, 1991) introductory offer from LINGO. Modeling effectiveness, especially with respect to flexibility in specifying arithmetic statements, is led by GAMS and LPL. Model compactness, as measured by the number of lines required to specify a model, is led by AMPL, LPL, MPL and PC-PROG; LPL, MPL and PC-PROG also provide context sensitive editors which automatically position the cursor where the error was detected. And finally, the most comprehensive user documentation is provided by GAMS, whereas GAMS, LINGO and LPL provide extensive libraries of sample models for those users who learn by example.     

Lattice size estimates for Gabor decompositions

It is shown that the Gabor frame operator for frames with lattice such thatab=1/N for some integerN1 is continuous on the modulation spaces ([9], [20]) whenever the basic functiong is a Schwartz function and (g, a, b) generates a frame forL ² (R). From this a sufficient condition on the lattice is given which guarantees that one has a Banach frame for the modulation spaces of Feichtinger.This work was supported by NSF grant # DMS-8916968 while the author was visiting Yale University.