Asymmetric hydrogenation of N-sulfonylated-alpha-dehydroamino acids: toward the synthesis of an anthrax lethal factor inhibitor

A novel and highly enantioselective Ru-catalyzed hydrogenation of N-sulfonylated-alpha-dehydroamino acids has been discovered and demonstrated in the synthesis of an anthrax lethal factor inhibitor (LFI). Herein, this methodology is used to prepare N-sulfonylated amino acids in up to 98% ee. This unprecedented hydrogenation uses a chiral Ru catalyst rather than Rh as typical for acylated dehydroamino acids and esters, and this work reports the first asymmetric hydrogenation of a tetrasubstituted dehydroamino acid derivative using a Ru catalyst. [reaction: see text]     

Novel results on structural investigations of natural minerals of clathrate hydrates

High-resolution powder X-ray diffraction measurements were carried out on gas hydrates in the angle-dispersive mode using a synchrotron radiation source. In contrast to the structural studies of laboratory-grown gas hydrates, this study has been performed on naturally grown clathrate hydrates obtained from the sea floor at different geographic locations. While the hydrate samples of the Cascadia Margin exhibit a preponderance of structure I, those from the Gulf of Mexico consist of mixed structures, namely structure II, structure I and structure H. Ice in structure Ih is inherently present in all the clathrate hydrate samples. PACS 61.10.Nz; 61.50.Ah; 61.66.Fn; 91.50.-r     

Properties of on-line social systems

We study properties of five different social systems: (i) internet society of friends consisting of over 10⁶ people, (ii) social network consisting of 3 × 10⁴ individuals, who interact in a large virtual world of Massive Multiplayer Online Role Playing Games (MMORPGs), (iii) over 10⁶ users of music community website, (iv) over 5 × 10⁶ users of gamers community server and (v) over 0.25 × 10⁶ users of books admirer website. Individuals included in large social network form an Internet community and organize themselves in groups of different sizes. The destiny of those systems, as well as the method of creating of new connections, are different, however we found that the properties of these networks are very similar. We have found that the network components size distribution follow the power-law scaling form. In all five systems we have found interesting scaling laws concerning human dynamics. Our research has shown how long people are interested in a single task, how much time they devote to it and how fast they are making friends. It is surprising that the time evolution of an individual connectivity is very similar in each system.     

Synthesis of the 5-hydroxymethyl-6-aryl-8-oxabicyclo[3.2.1]oct-3-en-2-one natural products descurainin and cartorimine

Reaction of pyranulose 6 with styrenes 12c or 13 and Et₃N in CH₂Cl₂ at 25 °C afforded the [5+2] cycloadducts 14c and 15, which were hydrolyzed to give the natural products 1 and descurainin (2) in 24 and 27% overall yield, respectively. Heating pyranulose 6 with cinnamate ester 21 in the presence of 2,6-di-t-butylpyridine in CH₃CN at 175 °C afforded the [5+2] cycloadduct, which was hydrolyzed to give cartorimine (3) in 13% yield.     

Properties of a Ring Critical Pointas Measures of Intramolecular H-Bond Strength

Summary.  The topological parameters derived from the Bader theory such as the electron density and its Laplacian at the ring critical point (RCP) are analysed here as possible measures of the H-bond stength for intramolecular H-bonds. The parameters of RCP correlate well with the other properties of intramolecular H-bonds which are known as good measures of the H-bond strength. The calculations were performed on two samples of compounds with intramolecular H-bonds: the derivatives of malonaldehyde and the derivatives of o-hydroxybenzaldehyde. MP2 and HF calculations were carried out using a 6-311++G^** basis set. E-mail: slagra@krysia.uni.lodz.pl Received February 18, 2002; accepted (revised) May 27, 2002     

Red- and blue-shifted hydrogen bonds: the Bent rule from quantum theory of atoms in molecules perspective

MP2/6-311++G(3pd,3df) calculations were performed on complexes of acetylene and fluoroform acting as the proton donating systems and different Lewis bases being the proton acceptors since these complexes are linked through C-H···Y hydrogen bonds. Quantum Theory of Atoms in Molecules (QTAIM) is applied to explain the nature of these interactions. The characteristics of bond critical points are presented for these complexes. The inter-relations between energetic and geometrical parameters as well as the parameters derived from the Natural Bond Orbital (NBO) theory are analyzed here. Red- and blue-shifted hydrogen bonds are detected for the complexes investigated and the differences between those interactions are analyzed from the QTAIM perspective. It is shown that such differences are in agreement with the Bent rule. The position of the bond critical point of the proton donating bond is connected with the nature of hydrogen bonding, that is, if it is blue- or red-shifted.     

Comparing ab initio density-functional and wave function theories: the impact of correlation on the electronic density and the role of the correlation potential

The framework of ab initio density-functional theory (DFT) has been introduced as a way to provide a seamless connection between the Kohn-Sham (KS) formulation of DFT and wave-function based ab initio approaches [R. J. Bartlett, I. Grabowski, S. Hirata, and S. Ivanov, J. Chem. Phys. 122, 034104 (2005)]. Recently, an analysis of the impact of dynamical correlation effects on the density of the neon atom was presented [K. Jankowski, K. Nowakowski, I. Grabowski, and J. Wasilewski, J. Chem. Phys. 130, 164102 (2009)], contrasting the behaviour for a variety of standard density functionals with that of ab initio approaches based on second-order M?ller-Plesset (MP2) and coupled cluster theories at the singles-doubles (CCSD) and singles-doubles perturbative triples [CCSD(T)] levels. In the present work, we consider ab initio density functionals based on second-order many-body perturbation theory and coupled cluster perturbation theory in a similar manner, for a range of small atomic and molecular systems. For comparison, we also consider results obtained from MP2, CCSD, and CCSD(T) calculations. In addition to this density based analysis, we determine the KS correlation potentials corresponding to these densities and compare them with those obtained for a range of ab initio density functionals via the optimized effective potential method. The correlation energies, densities, and potentials calculated using ab initio DFT display a similar systematic behaviour to those derived from electronic densities calculated using ab initio wave function theories. In contrast, typical explicit density functionals for the correlation energy, such as VWN5 and LYP, do not show behaviour consistent with this picture of dynamical correlation, although they may provide some degree of correction for already erroneous explicitly density-dependent exchange-only functionals. The results presented here using orbital dependent ab initio density functionals show that they provide a treatment of exchange and correlation contributions within the KS framework that is more consistent with traditional ab initio wave function based methods.     

Attractive halogen–halogen interactions: F3CCl⋯FH and F3CCl⋯FCH3 dimers

The F₃CCl?FH and F₃CCl?FCH₃ dimers, which feature the halogen–halogen contacts, are investigated at MP2/6–311++G(d,p) and MP2/aug–cc–pVDZ levels of approximation. The binding energies of these complexes are found to be comparable to those of the weak hydrogen bonds. In both complexes the Cl?F are found to be significantly shorter than the sum of the corresponding van der Waals radii. The C–Cl?F contacts are also found to exhibit certain deviation from linearity. However, the energy differences between linear and bent structures are very small and primarily accounted for by electrostatic interactions between remote parts of the dimer. This indicates a high conformational flexibility of the halogen–halogen contacts and may help to explain the diversity of structural features in crystals formed by halogen-containing molecules. In both dimers the halogen–halogen interaction leads to certain shortening of the C–Cl electron accepting bond. This is accompanied by a small increase of the C–Cl stretching frequency. Hence, the two investigated dimers can possibly be classified as the blue-shifting halogen–halogen contacts.