Analytical model for studying how environmental factors influence protein conformational stability in solution

We introduce an analytical modeling strategy for probing the conformational stability of globular proteins in aqueous solution. In this approach, the intrinsic (i.e., infinite dilution) thermodynamic stability and coarse structural properties of the proteins, as well as the effective protein-protein interactions, derive from a heteropolymer collapse theory that incorporates predicted temperature- and pressure-dependent hydrophobic interactions. Protein concentration effects are estimated by integrating this information into a molecular thermodynamic model, which is an ad hoc generalization of the exact equilibrium theory of a one-dimensional binary mixture of square-well particles that interconvert through an isomerization (i.e., folding) reaction. The end result is an analytical multiscale modeling approach which, although still schematic, can predict that folded proteins exhibit a closed-loop region of stability in the pressure-temperature plane and that protein concentration has a nonmonotonic effect on protein stability, results consistent with qualitative trends observed in both experiments of protein solutions and simulations of coarse-grained protein models.     

Synthesis of chiral cyclic oligothiazolines: a novel structural motif for a macrocyclic molecule

The synthesis of chiral cyclic oligo(4-beta-methyl)thiazolines is described; linear oligothiazolines were efficiently prepared by the iterative formation of a thiazoline ring and a two-directional block condensation, and construction of 24- to 36-membered cyclic oligothiazoline systems could be achieved by the head-to-tail cyclooligomerization of doubly deprotected linear fragments and subsequent thiazoline formation.     

Physical controls on directed virus assembly at nanoscale chemical templates

Viruses are attractive building blocks for nanoscale heterostructures, but little is understood about the physical principles governing their directed assembly. In situ force microscopy was used to investigate organization of Cowpea Mosaic Virus engineered to bind specifically and reversibly at nanoscale chemical templates with sub-30 nm features. Morphological evolution and assembly kinetics were measured as virus flux and inter-viral potential were varied. The resulting morphologies were similar to those of atomic-scale epitaxial systems, but the underlying thermodynamics was analogous to that of colloidal systems in confined geometries. The 1D templates biased the location of initial cluster formation, introduced asymmetric sticking probabilities, and drove 1D and 2D condensation at sub-critical volume fractions. The growth kinetics followed a t(1/2) law controlled by the slow diffusion of viruses. The ability of poly(ethylene glycol) (PEG) to induce the lateral expansion of virus clusters away from the 1D templates suggests a significant role for weak interactions.     

Arsenic trioxide targets Hsp60, triggering degradation of p53 and survivin

The mechanisms of action of arsenic trioxide (ATO), a clinically used drug for the treatment of acute promyelocytic leukemia (APL), have been actively studied mainly through characterization of individual putative protein targets. There appear to be no studies at a system level. Herein, we integrate metalloproteomics through a newly developed organoarsenic probe, As-AC (C₂₀H₁₇AsN₄O₃S₂) with quantitative proteomics, allowing 37 arsenic binding and 250 arsenic regulated proteins to be identified in NB4, a human APL cell line. Bioinformatics analysis reveals that ATO disrupts multiple physiological processes, in particular, chaperone-related protein folding and cellular response to stress. Furthermore, we discover heat shock protein 60 (Hsp60) as a vital target of ATO. Through biophysical and cell-based assays, we demonstrate that ATO binds to Hsp60, leading to abolishment of Hsp60 refolding capability. Significantly, the binding of ATO to Hsp60 disrupts the formation of Hsp60-p53 and Hsp60-survivin complexes, resulting in degradation of p53 and survivin. This study provides significant insights into the mechanism of action of ATO at a systemic perspective, and serves as guidance for the rational design of metal-based anticancer drugs.

A highly selective organoarsenic fluorescent probe As-AC and quantitative proteomics were employed to track arsenic-binding and regulating proteins in live leukemia cells. Hsp60 was validated as a new target of ATO.     

Silkworm silk/poly(lactic acid) biocomposites: Dynamic mechanical, thermal and biodegradable properties

Silkworm silk/Poly(lactic acid) (silk/PLA) biocomposites with potential for environmental engineering applications were prepared by using melting compound methods. By means of Dynamic mechanical analysis (DMA), Differential scanning calorimetry (DSC), Thermogravimetric analysis (TGA), Coefficient of thermal expansion test, Enzymatic degradation test and Scanning electron microscopy (SEM), the effect of silk fiber on the structural, thermal and dynamic mechanical properties and enzymatic degradation behavior of the PLA matrix was investigated. As silk fiber was incorporated into PLA matrix, the stiffness of the PLA matrix at higher temperature (70-160 °C) was remarkably enhanced and the dimension stability also was improved, but its thermal stability became poorer. Moreover, the presence of silk fibers also significantly enhanced the enzymatic degradation ability of the PLA matrix. The higher the silk fiber content, the more the weight loss.     

Positive periodic solution of second-order neutral functional differential equations

In this paper, we consider two types of second-order neutral functional differential equations. By choosing available operators and applying Krasnoselskii’s fixed point theorem, we obtain sufficient conditions for the existence of periodic solutions to such equations.     

Fabrication of Monodisperse Toroidal Particles by Polymer Solidification in Microfluidics

Microdoughnuts: Polymer toroidal particles such as the one shown in the left picture have been prepared by a capillary microfluidic technique. Droplets of polymer solution undergo non‐uniform solidification to form the anisotropic polymer particles. By incorporating functional materials inside the polymer network, functional toroidal particles (center and right images) can be tailor‐made for specific applications such as magnetic actuation.

     

Quantitative analysis of methyl green using surface-enhanced resonance Raman scattering

Surface-enhanced resonance Raman scattering (SERRS) spectra of aqueous solutions of the triphenylmethane dye methyl green have been obtained for the first time by use of citrate-reduced silver colloids and a laser excitation wavelength of 632.8 nm. Given the highly fluorescent nature of the analyte, which precluded collection of normal Raman spectra of the dye in solution and powdered state, it was highly encouraging that SERRS spectra showed no fluorescence due to quenching by the silver sol. The pH conditions for SERRS were optimised over the pH range 0.5–10 and the biggest enhancement for SERRS of this charged dye was found to be at pH 2.02, thus this condition was used for quantitative analysis. SERRS was found to be highly sensitive and enabled quantitative determination of methyl green over the range 10⁻⁹ to 10⁻⁷ mol dm⁻³. Good fits to correlation coefficients were obtained over this range using the areas under the vibrational bands at 1615 and 737 cm⁻¹. Finally, a limit of detection of 83 ppb was calculated, demonstrating the sensitivity of the technique.     

Determination of fluorescence and non-radiative de-excitation rates of excited 3-pentanone at low pressures

3-Pentanone photophysics measurements and subsequent fluorescence quantum yield (FQY) model development are presented. A heated, flowing optical cell and laser excitation at 248, 266, 277, and 308 nm were utilized, allowing investigation of FQY and absorption cross-section values for 3-pentanone vapor from 298 to 690 K and 10 to 30 mbar. Measurements of FQY were also made for 20 mbar of 3-pentanone at 1.3 bar total pressure in nitrogen from 298 to 530 K and in air from 298 to 487 K. Absolute FQY was determined by calibration to Rayleigh scattering of nitrogen gas. Based on these FQY measurements and fluorescence lifetime data from previous work, the fluorescence rate k _f was determined to be 3.70×10⁵ s⁻¹. The current work extends knowledge of the non-radiative rate k _nr to vibrational energies of 15000 cm⁻¹, and the expression for k _nr was optimized to include a fit to these new data points. Finally, variation of FQY with 3-pentanone vapor pressure was used to optimize the vibrational relaxation cascade parameter α _3p . The updated FQY model for 3-pentanone vapor shows agreement within 8% to the current FQY data across the investigated range of temperatures and pressures.     

Full-field technique for measuring the spectral evolution of reconfigurable photonic filters

This Letter demonstrates a measurement technique based on frequency-to-time mapping and coherent detection, which enables the complete (i.e., amplitude and phase) characterization of dynamically reconfigurable photonic filters. We apply this technique to a unit cell from a silicon CMOS-compatible photonic lattice filter that has a rapidly changing transfer function with an 8.33 ns update time, 120 MHz spectral resolution, and 12 GHz bandwidth. These dynamic measurements allow characterization of transients, thermal effects, filter fidelity, and other time-dependent phenomena during switching.