Monte Carlo simulation of the two-dimensional Potts model using nonextensive statistics

The standard Potts model is investigated in the framework of nonextensive statistical mechanics. We performed Monte Carlo simulations on two-dimensional lattices with linear sizes ranging from 16 to 64 using the Metropolis algorithm, where the classical Boltzmann–Gibbs transition probabilities were modified for the nonextensive case. We found that the Potts model undergoes a phase transition in the nonextensive scenario. We established the order of the phase transition and we computed the critical temperature for different values of the Tsallis entropic index.     

Direct probes of linearly polarized gluons inside unpolarized hadrons

We show that linearly polarized gluons inside unpolarized hadrons can be directly probed in jet or heavy quark pair production in electron-hadron collisions. We discuss the simplest cos2? asymmetries and estimate their maximal value, concluding that measurements of the unknown linearly polarized gluon distribution in the proton should be feasible in future Electron-Ion Collider or Large Hadron electron Collider experiments. Analogous asymmetries in hadron-hadron collisions suffer from factorization breaking contributions and would allow us to quantify the importance of initial- and final-state interactions.     

Band gap and electronic structure of MgSiN2 determined using soft X‐ray spectroscopy and density functional theory

We present a study of MgSiN₂ using soft X‐ray absorption and emission spectroscopy which directly probe the partial density of states. MgSiN₂ is new as a host lattice for luminescence materials and used in phosphor‐converted light‐emitting diodes. We compare our measurements to our full potential, all electron density funtional theory calculations. We find excellent agreement between experiment and theory and the band gap of MgSiN₂ is measured to be 5.6 ± 0.2 eV in agreement with our calculated value of 5.72 eV. (© 2015 WILEY‐VCH Verlag GmbH &Co. KGaA, Weinheim)     

Liquid‐Phase Enantioselective Chromatographic Resolution Using Interpenetrated,Homochiral Framework Materials

Effective separation of mixtures of enantiomers is of continuing interest in analytical and preparative chromatography, with new materials frequently designed and tested. We report two new enantiomerically pure 2D→3D interpenetrated materials used as stationary liquid chromatographic (LC) phases that are shown to resolve selected racemic mixtures with enantiomeric and chemical selectivity. Dicarboxylate ligands derived from amino acids on naphthalene and perylene cores form 2D frameworks that interpenetrate to give 3D structures. Selectivity is initially tested by uptake from solution; subsequent LC methods show that the materials exhibit resolution of racemic analytes in ‘micro‐columns’ and that the two closely related materials show markedly different selectivity for different analytes with much greater activity than the ligands alone. Comparison with a close‐packed analogue suggests that the separation activity is largely due to surface effects.     

Conformational preferences of an amyloidogenic peptide: IR spectroscopy of Ac-VQIVYK-NHMe

The (306)VQIVYK(311) sequence in the tau peptide is essential for the formation of intracellular amyloid fibrils related to Alzheimer's disease, where it forms interdigitating cross-beta-structures. The inherent conformational preferences of the capped hexapeptide Ac-VQIVYK-NHMe were characterized in the gas phase. IR/UV double-resonance spectroscopy of the peptide isolated in a cold molecular beam was used to probe the conformation of the neutral peptide. The influence of protonation at the lysine side chain was investigated at 298 K by characterizing the protonated peptide ion, Ac-VQIVYK(H(+))-NHMe, with IRMPD spectroscopy in the fingerprint and amide I/II band region in an FTICR mass spectrometer. The conformations for both neutral and protonated peptides were predicted by an extensive conformational search procedure followed by cluster analysis and then DFT calculations. Comparison of the experimental and computed IR spectra, with consideration of the relative energies, was used to assign the dominant conformations observed. The neutral peptide adopts a beta-hairpin-like conformation with two loosely extended peptide chains, demonstrating the preference of the sequence for extended beta-strand-like structures. In the protonated peptide, the lysine NH3(+) disrupts this extended conformation by binding to the backbone and induces a transition to a random-coil-like structure.     

In search of the [PhB(mu-N(t)Bu)2]2As. radical: experimental and computational investigations of the redox chemistry of group 15 bis-boraamidinates

DFT calculations for the group 15 radicals [PhB(mu-N(t)Bu)2]2M. (M = P, As, Sb, Bi) predict a pnictogen-centered SOMO with smaller contributions to the unpaired spin density arising from the nitrogen and boron atoms. The reactions of Li 2[PhB(mu-NR)2] (R = (t)Bu, Dipp) with PCl 3 afforded the unsolvated complex LiP[PhB(mu-N(t)Bu)2] 2 ( 1a) in low yield and ClP[PhB(mu-NDipp)2] (2), both of which were structurally characterized. Efforts to produce the arsenic-centered neutral radical, [PhB(mu-N (t) Bu) 2] 2As., via oxidation of LiAs[PhB(mu-N(t)Bu)2]2 with one-half equivalent of SO 2Cl 2, yielded the Zwitterionic compound [PhB(mu-N (t) Bu) 2As(mu-N(t)Bu)2B(Cl)Ph] (3) containing one four-coordinate boron center with a B-Cl bond. The reaction of 3 with GaCl3 produced the ion-separated salt, [PhB(mu-N(t)Bu)2] 2As (+)GaCl 4 (-) ( 4), which was characterized by X-ray crystallography. The reduction of 3 with sodium naphthalenide occurred by a two-electron process to give the corresponding anion [{PhB(mu-N(t)Bu)2} 2As] (-) as the sodium salt. Voltammetric investigations of 4 and LiAs[PhB(mu-N (t) Bu) 2] 2 ( 1b) revealed irreversible processes. Attempts to generate the neutral radical [PhB(mu-N(t)Bu)2] 2As. from these ionic complexes via in situ electrolysis did not produce an EPR-active species.     

Machine Learning Informs RNA-Binding Chemical Space**

Small molecule targeting of RNA has emerged as a new frontier in medicinal chemistry, but compared to the protein targeting literature our understanding of chemical matter that binds to RNA is limited. In this study, we reported R epository O f BI nders to N ucleic acids (ROBIN), a new library of nucleic acid binders identified by small molecule microarray (SMM) screening. The complete results of 36 individual nucleic acid SMM screens against a library of 24 572 small molecules were reported (including a total of 1 627 072 interactions assayed). A set of 2 003 RNA-binding small molecules was identified, representing the largest fully public, experimentally derived library of its kind to date. Machine learning was used to develop highly predictive and interpretable models to characterize RNA-binding molecules. This work demonstrates that machine learning algorithms applied to experimentally derived sets of RNA binders are a powerful method to inform RNA-targeted chemical space.     

Mass spectrometric analysis of the marine lipophilic biotoxins pectenotoxin-2 and okadaic acid by four different types of mass spectrometers

The performances of four different mass spectrometers [triple-quadrupole (TQ), time-of-flight (ToF), quadrupole ToF (Q-ToF) and ion trap (IT)] for the detection of the marine lipophilic toxins pectenotoxin-2 (PTX2) and okadaic acid (OA) were investigated. The spectral data obtained with the different mass spectrometric analyzers were used to propose fragmentation schemes for PTX2 in the positive electrospray mode and for OA in the negative electrospray mode. TQ data were used to obtain product ions, while ToF and Q-ToF-MS produced accurate mass data of the precursor ion and product ions, respectively. IT data provided a better understanding of the fragmentation pathways using MS(n) experiments. With respect to analytical performance, all four mass analyzers showed a good linearity (R(2) > 0.97) and repeatability (CV < 20%). Detection limits (LoDs) (S/N = 3) were the lowest on triple-quad MS: 12.2 and 2.9 pg on-column for PTX2 and OA, respectively.     

Development and validation of automated SPE-HPLC-MS/MS methods for the quantification of asenapine, a new antipsychotic agent, and its two major metabolites in human urine

To support the evaluation of the pharmacokinetic parameters of asenapine (ASE) in urine, we developed and validated online solid‐phase extraction high‐performance liquid chromatography methods with tandem mass spectrometry detection (SPE‐LC‐MS/MS) for the quantification of ASE and two of its major metabolites, N‐desmethylasenapine (DMA) and asenapine‐N⁺‐glucuronide (ASG). The linearity in human urine was found acceptable for quantification in a concentration range of 0.500–100 ng/mL for ASE and DMA and 10.0–3000 ng/mL for ASG, respectively. Copyright © 2012 John Wiley & Sons, Ltd.     

Are Monophospha(III)amidines and -guanidines with Ionizable Hydrogens Tautomeric? Towards a Deeper Understanding of Two Related Hetero-element Functional Groups

This paper presents definitive structural evidence for N,P(III)-monophosphaamidines in P=C and N=C isomeric forms from a combination of new syntheses, single-crystal X-ray diffraction (SC-XRD), solid-state NMR and FTIR. Evidence is also provided for C-amino-(σ²,λ³)-phosphaalkene and C-(σ³,λ³)-phosphinoimine tautomerism in solution using multi-nuclear NMR methods. Synthesis and SC-XRD structure determination of a trisubstituted N,N’,P(III)-monophosphaguanidine is presented, the first structure of a phospha(III)guanidine with two ionizable H atoms. The structural evidence is convincing for an N=C geometry, resulting in both N−H and P−H in the molecule. A detailed computational investigation using DFT methods is presented, with the goal of understanding the tautomeric structure preferences both at the fundamental level (parent molecules with all substituents on the heteroatoms being hydrogen) and using the full structures containing the very bulky 2,6-diisopropylphenyl (Dipp) substituents employed in this study. Arguments are espoused for treating phospha(III)amidines and -guanidines as new types of functional groups, similar to but distinct from the familiar organic analogues. Limited reactivity studies and a voltammetry study of one phospha(III)amidine are included with the supporting information.