Fast Photochemical Oxidation of Proteins (FPOP) Maps the Epitope of EGFR Binding to Adnectin

Epitope mapping is an important tool for the development of monoclonal antibodies, mAbs, as therapeutic drugs. Recently, a class of therapeutic mAb alternatives, adnectins, has been developed as targeted biologics. They are derived from the 10th type III domain of human fibronectin (¹⁰Fn3). A common approach to map the epitope binding of these therapeutic proteins to their binding partners is X-ray crystallography. Although the crystal structure is known for Adnectin 1 binding to human epidermal growth factor receptor (EGFR), we seek to determine complementary binding in solution and to test the efficacy of footprinting for this purpose. As a relatively new tool in structural biology and complementary to X-ray crystallography, protein footprinting coupled with mass spectrometry is promising for protein–protein interaction studies. We report here the use of fast photochemical oxidation of proteins (FPOP) coupled with MS to map the epitope of EGFR-Adnectin 1 at both the peptide and amino-acid residue levels. The data correlate well with the previously determined epitopes from the crystal structure and are consistent with HDX MS data, which are presented in an accompanying paper. The FPOP-determined binding interface involves various amino-acid and peptide regions near the N terminus of EGFR. The outcome adds credibility to oxidative labeling by FPOP for epitope mapping and motivates more applications in the therapeutic protein area as a stand-alone method or in conjunction with X-ray crystallography, NMR, site-directed mutagenesis, and other orthogonal methods. Figure

?     

Inhibitive effect of potassium methylsiliconate on hydration swelling of montmorillonite

Herein we report on a study on the inhibition effect of potassium methylsiliconate on hydration swelling of montmorillonite. The results of linear swelling tests showed that potassium methylsiliconate exhibits a high performance as an effective shale inhibitor in drilling fluids. The inhibition mechanism was investigated by means of a variety of methods including Fourier transform infrared spectroscopy, X-ray diffraction, transmission electron microscopy, and zeta potential measurements. The high degree of inhibition is a result of the synergy of action of potassium cations and methylsiliconate anions. Methylsiliconate anions form a hydrophobic shell around each montmorillonite particle through the adsorption on the edge sites, thus inhibiting the penetration of water into the interlayer. The potassium ions promote the formation of a less hydratable structure of montmorillonite through cation-exchange interaction.     

Two mononuclear molybdenum(VI) oxo complexes with tridentate hydrazone ligands: Synthesis and crystal structures

Reaction of [MoO₂(Acac)₂] (Acac = acetylacetonate) with two similar hydrazone ligands in methanol yielded two mononuclear molybdenum(VI) oxocomplexes with general formula [MoO₂(L)(CH₃OH)], where L = L¹ = (4-nitrophenoxy)acetic acid [1-(3-ethoxy-2-hydroxyphenyl)methylidene]hydrazide (H₂L¹) and L = L² = (4-nitrophenoxy)acetic acid [1-(5-bromo-2-hydroxyphenyl)methylidene]hydrazide (H₂L²). Crystal and molecular structures of the complexes were determined by single crystal X-ray diffraction method. All investigated compounds were further characterized by elemental analysis and FT-IR spectra. Single crystal X-ray structural studies indicate that the hydrazone ligands coordinate to the MoO₂ cores through enolate oxygen, phenolate oxygen, and azomethine nitrogen. The Mo atoms in both complexes are in octahedral coordination.     

Spectroscopy and X-ray studies of {{6,6′-dimethoxy-2,2′-[ethane-1,2-diyl-bis-(nitrilomethylidyne)]diphenolato}(aqua)-dioxouranium(VI)} dehydrate

The C₁₈H₂₀N₂O₇U · 2H₂O (I) complex has been prepared and characterized by single crystal X-ray diffraction properties (CIF file CCDC no. 913243). The title compound crystallizes in the orthorhombic system, space group Pbca with a = 19.542(5), b = 9.916(5), c = 21.940(5) Å, V = 4252(3) ų and Z = 8. In complex I, the U atom has a distorted pentagonal-bipyramidal geometry with a tetradentate Schiff base ligand and water molecule in the equatorial plane and oxo atoms in the axial positions. The crystal packing occurs intra-inter molecular hydrogen bonds.     

Synthesis of Cu vanadate nanorods for visible‐light photocatalytic degradation of gentian violet

Cu vanadate nanorods have been synthesized via the hydrothermal process using polymer polyvinyl pyrrolidone (PVP) as the surfactant. X‐ray diffraction (XRD) shows that the nanorods are composed of monoclinic Cu₅V₂O₁₀ phase. Scanning electron microscopy (SEM) observation shows that the diameter and length of the nanorods are 50–300 nm and 3 μm, respectively. PVP concentration, hydrothermal temperature and duration time play essential roles in the formation and sizes of the Cu vanadate nanorods. A PVP‐assisted nucleation and crystal‐growth process is proposed to explain the formation of the Cu vanadate nanorods. Gentian violet (GV) is used to evaluate the photocatalytic activities of the Cu vanadate nanorods under solar light. The GV concentration clearly decreases with increasing irradiation time, and content of the Cu vanadate nanorods. GV solution with the concentration of 10 mg L⁻¹ can be totally degraded under solar light irradiation for 4 h using 10 mg Cu vanadate nanorods. The Cu vanadate nanorods have good photocatalytic activities for the degradation of GV under solar light.     

A Multifunctional Photoswitch: 6π Electrocyclization versus ESIPT and Metalation

A terthiazole‐based molecular switch associating 6π electrocyclization, excited state intramolecular proton transfer (ESIPT), and strong metal binding capability was prepared. The photochemical and photophysical properties of this molecule and of the corresponding nickel and copper complexes were thoroughly investigated by steady‐state and ultrafast absorption spectroscopy and rationalized by DFT/TDDFT calculations. The switch behaves as a biphotochrome with time‐dependent photochemical outcome and displays efficient ESIPT‐based fluorescence photoswitching. Both photochemical reactions are suppressed by nickel or copper metalation, and the main factors contributing to the quenching of the electrocyclization are discussed.     

Crystallization behavior,tensile behavior and hydrophilicity of poly(vinylidene fluoride)/poly(vinyl pyrrolidone) blends

Binary polymer blends of hydrophobic poly(vinylidene fluoride) (PVDF) and hydrophilic poly(vinylpyrrolidone) (PVP) were prepared by melt blending. The crystallization behavior, mechanical properties and hydrophilicity of the binary blends were investigated using Fourier transform infrared spectroscopy (FTIR), wide-angle X-ray diffractometry (WAXD), differential scanning calorimeter (DSC) scanning, non-isothermal crystallization kinetics, successive self-nucleation and annealing (SSA) fractionation, tensile tests and contact angle tests. The analysis of FTIR, WAXD, DSC scanning, non-isothermal crystallization kinetics and SSA fractionation showed that the addition of PVP greatly influenced the crystallization behavior of the sample. As the PVP content increased, the crystallization temperature, crystallization rate, degree of crystallinity, and the amount of thick lamellaes decreased gradually. Meanwhile, PVP favored the formation of β-phase of PVDF. The results of tensile test revealed that the addition of PVP increased the elongation at break of the sample, and lowered the yield stress. Besides, the result of contact angle test indicated that the hydrophilicity of PVDF was remarkably improved in the presence PVP. The relationship between crystallization behavior and the tensile behavior, hydrophilicity were discussed.     

Improvements of Tolerance to Stress Conditions by Genetic Engineering in Saccharomyces Cerevisiae during Ethanol Production

Saccharomyces cerevisiae, industrial yeast isolate, has been of great interest in recent years for fuel ethanol production. The ethanol yield and productivity depend on many inhibitory factors during the fermentation process such as temperature, ethanol, compounds released as the result of pretreatment procedures, and osmotic stress. An ideal strain should be able to grow under different stress conditions occurred at different fermentation steps. Development of tolerant yeast strains can be achieved by reprogramming pathways supporting the ethanol metabolism by regulating the energy balance and detoxicification processes. Complex gene interactions should be solved for an in-depth comprehension of the yeast stress tolerance mechanism. Genetic engineering as a powerful biotechnological tool is required to design new strategies for increasing the ethanol fermentation performance. Upregulation of stress tolerance genes by recombinant DNA technology can be a useful approach to overcome inhibitory situations. This review presents the application of several genetic engineering strategies to increase ethanol yield under different stress conditions including inhibitor tolerance, ethanol tolerance, thermotolerance, and osmotolerance.     

Poly(HEMA-co-NBMI) Monolithic Cryogel Columns for IgG Adsorption

Supermacroporous poly(2-hydroxyethyl methacrylate-co-1,5-naphthalene bismaleimide) [poly(HEMA-co-NBMI)] monolithic cryogel column was prepared by free radical cryo-copolymerization of HEMA with NBMI as a hydrophobic functional comonomer and N,N′-methylene-bisacrylamide as cross-linker directly in a plastic syringe for adsorption of albumin. The monolithic cryogel contained a continuous polymeric matrix which has interconnected pores of 10–100 μm size. Poly(HEMA-co-NBMI) cryogel was characterized by swelling studies, FTIR and scanning electron microscopy. The equilibrium swelling degree of the poly(HEMA-co-NBMI) cryogel was 10.5 g of H₂O/g dry cryogel. Poly(HEMA-co-NBMI) cryogel was used in the adsorption/desorption of IgG from aqueous solutions. The maximum amount of IgG adsorption from aqueous solution in phosphate buffer was 98.20 mg/g polymer at pH 7.0. The nonspecific adsorption of IgG onto plain poly(HEMA) cryogel was very low (2.79 g/g polymer). It was observed that IgG could be repeatedly adsorbed and desorbed with the poly(HEMA-co-NBMI) cryogel without significant loss of adsorption capacity.     

Ion exchange of Cs+ and Sr2+ by natural clinoptilolite from bi-cationic solutions and XRD control of their structural positioning

Journal of Radioanalytical and Nuclear Chemistry - Clinoptilolite from Bulgaria was tested for uptake towards Cs+ and Sr2+ from bi-cationic solutions using batch technique. Contact time and cation...