Development of surface chemistry for surface plasmon resonance based sensors for the detection of proteins and DNA molecules

The immobilisation of biological recognition elements onto a sensor chip surface is a crucial step for the construction of biosensors. While some of the optical biosensors utilise silicon dioxide as the sensor surface, most of the biosensor surfaces are coated with metals for transduction of the signal. Biological recognition elements such as proteins can be adsorbed spontaneously on metal or silicon dioxide substrates but this may denature the molecule and can result in either activity reduction or loss. Self assembled monolayers (SAMs) provide an effective method to protect the biological recognition elements from the sensor surface, thereby providing ligand immobilisation that enables the repeated binding and regeneration cycles to be performed without losing the immobilised ligand, as well as additionally helping to minimise non-specific adsorption. Therefore, in this study different surface chemistries were constructed on SPR sensor chips to investigate protein and DNA immobilisation on Au surfaces. A cysteamine surface and 1%, 10% and 100% mercaptoundecanoic acid (MUDA) coatings with or without dendrimer modification were utilised to construct the various sensor surfaces used in this investigation. A higher response was obtained for NeutrAvidin immobilisation on dendrimer modified surfaces compared to MUDA and cysteamine layers, however, protein or DNA capture responses on the immobilised NeutrAvidin did not show a similar higher response when dendrimer modified surfaces were used.     

Pyrolysis of tobacco factory waste biomass

Journal of Thermal Analysis and Calorimetry - Tobacco waste is one of the main industrial agricultural wastes. In this study, potential of pyrolysis process for valorization of this type of biomass...     

Simple and Sensitive Spectrofluorimetric Method for the Determination of Oseltamivir Phosphate in Capsules Through Derivatization with Fluorescamine

A new, simple and sensitive spectrofluorimetric method has been developed for the determination of oseltamivir phosphate (OSP) in capsules. The method is based on the reaction between oseltamivir and fluorescamine in borate buffer solution of pH 8.50 to give highly fluorescent derivatives that are measured at 483 nm using an excitation wavelength of 381. The different experimental parameters effecting the development and stability of the reaction product were carefully studied and optimized. The fluorescence intensity concentration plot is rectilinear over the range 50–450 ng mL⁻¹ with a lower detection limit (LOD) of 1.219 ng mL⁻¹ and limit of quantitation (LOQ) of 4.064 ng mL⁻¹. Selectivity was validated by subjecting stock solution of OSP to acidic, basic, oxidative, and thermal degradation. No interference was observed from excipients present in formulations. The developed method was successfully applied to determination of the drug in capsules. The mean % recovery (n = 6) was 100.08. The results obtained were in good agreement with those obtained using a reported spectrophotometric method.     

Energy absorption buildup factors of some potential bioactive compounds in the energy region 0.015–15 MeV

Kinetic energy released per unit mass relative to air and energy absorption buildup factors has been calculated for some potential bioactive compounds in the energy region of 0.015–15?MeV. The bioactive compounds of 1-aryl-3-dibenzylamino-propane-1-on hydrochloride type Mannich bases were used in this work. Aryl part was changed as C₆H₅ (1), 4-CH₃C₆H₄ (2), C₄H₃S-2-yl (3), 4-FC₆H₄ (4), 4-BrC₆H₄ (5), 4-ClC₆H₄ (6), and 4-NO₂C₆H₄ (7). The energy absorption buildup factors have been calculated for penetration depth of 40 mean free paths. It is observed that kinetic energy released per unit mass relative to air depends on the photon energy and chemical content of compounds. The compounds with least mean atomic number possess the maximum value of energy absorption buildup factors. Also, the energy absorption buildup factors are found the highest in intermediate energy, whereas the lowest in low as well as high energies.     

Substituent effects to the electrochromic behaviors of electropolymerized metallophthalocyanine thin films

Metallophthalocyanines (MPcs) (M = 2H⁺, Zn²⁺, Co²⁺, and Cu²⁺) bearing diethylaminophenoxy and chloro substituents at the peripheral positions (MPc-tdea-tCl) were coated on the working electrodes with the electropolymerization and tested as electrochromic materials. Altering the metal center of MPcs affected the redox activities of MPc-tdea-tCl films. All electropolymerized MPc-tdea-tCl films behaved as conductive and redox active films in different electrolyte systems. Electrochromic properties of MPc-tdea-tCl films were investigated via the voltammetric, in situ spectroelectrochemical, and in situ spectroelectrocolorimetric measurements. H ₂ Pc-tdea-tCl film did not give any electrochromic response, while ZnPc-tdea-tCl and CuPc-tdea-tCl films behave as a reasonable electrochromic material. Distinctive color changes with short response times, high optical contrast, and better optical and coulombic stabilities were only observed with CoPc-tdea-tCl film.     

Antioxidant and cytotoxic properties of some new dipeptide-indole conjugates

In this study, 10 new indole-dipeptide conjugates were synthesized, and their anticancer activity was determined against on A2780 (ovarian cancer cell line) and MCF-7 (breast cancer cell line) cells. Among compounds, 5 and 10 showed better activity against A2780 cell lines than the standard drug docatexel at 0.1 and 1 μM concentrations, while only compound 5 showed better activity than docatexel, the MCF-7 cell line at 0.1 and 1 μM concentrations. The antioxidant potencies of the compounds were low in both the DPPH and iron reducing power methods tested when compared to standard antioxidants used in this work.     

Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2

We present the performance of HADDOCK, our information-driven docking software, in the second edition of the D3R Grand Challenge. In this blind experiment, participants were requested to predict the structures and binding affinities of complexes between the Farnesoid X nuclear receptor and 102 different ligands. The models obtained in Stage1 with HADDOCK and ligand-specific protocol show an average ligand RMSD of 5.1 Å from the crystal structure. Only 6/35 targets were within 2.5 Å RMSD from the reference, which prompted us to investigate the limiting factors and revise our protocol for Stage2. The choice of the receptor conformation appeared to have the strongest influence on the results. Our Stage2 models were of higher quality (13 out of 35 were within 2.5 Å), with an average RMSD of 4.1 Å. The docking protocol was applied to all 102 ligands to generate poses for binding affinity prediction. We developed a modified version of our contact-based binding affinity predictor PRODIGY, using the number of interatomic contacts classified by their type and the intermolecular electrostatic energy. This simple structure-based binding affinity predictor shows a Kendall’s Tau correlation of 0.37 in ranking the ligands (7th best out of 77 methods, 5th/25 groups). Those results were obtained from the average prediction over the top10 poses, irrespective of their similarity/correctness, underscoring the robustness of our simple predictor. This results in an enrichment factor of 2.5 compared to a random predictor for ranking ligands within the top 25%, making it a promising approach to identify lead compounds in virtual screening.     

Mechano-optical behavior in poly (ethylene terephthalate)/poly (ether imide) blends

Mechano-optical behavior and related structural evolution during uniaxial stretching of melt miscible poly (ethylene terephthalate) (PET)/poly (ether imide) (PEI) blends were studied near their glass transition temperature using an instrumented machine that measures true stress, true strain and spectral birefringence simultaneously. Stretching from amorphous state, two distinct stress-optical regimes were observed at temperatures between T_g and T_cc (cold crystallization). Near T_g, a typical photoelastic behavior persists until a critical temperature above which temperature independent initial stress optical behavior is observed. At those temperatures above T_g, where glassy behavior is observed, decreasing stretching rate was also found to eliminate this glassy photo elastic regime leading to the observation of a linear initial stress optical behavior that becomes temperature independent as expected from linear stress optical rule. Increasing PEI concentration in the blends suppresses crystallizability and increases temperature at which initial elastic region disappears giving way to pure liquid behavior where linear stress optical behavior is observed. This is attributed to the increase and broadening of the glass transition temperature with the addition of noncrystallizable PEI. In PET/PEI blends, the stress-optical coefficient (SOC), determined in a linear stress optical regime, was found to increase linearly with the increase in PEI concentration.     

Determination of α-Cypermethrin from Soil by Using HPTLC

JPC – Journal of Planar Chromatography – Modern TLC - α-Cypermethrin is a synthetic pyrethroid insecticide used to control insects. In soil, α-cypermethrin biodegrades...