Contribution of individual zinc ligands to metal binding and peptide folding of zinc finger peptides

Little is known about the contribution of individual zinc-ligating amino acid residues for coupling between zinc binding and protein folding in zinc finger domains. To understand such roles of each zinc ligand, four zinc finger mutant peptides corresponding to the second zinc finger domain of Sp1 were synthesized. In the mutant peptides, glycine was substituted for one of four zinc ligands. Their metal binding and folding properties were spectroscopically characterized and compared to those of the native zinc finger peptide. In particular, the electronic charge-transfer and d-d bands of the Co(II)-substituted peptide complexes were used to examine the metal coordination number and geometry. Fluorescence emission studies revealed that the mutant peptides are capable of binding zinc despite removing one ligand. Circular dichroism results clearly showed the induction of an alpha-helix by zinc binding. In addition, the structures of certain mutant zinc finger peptides were simulated by molecular dynamics calculation. The information indicates that His23 and the hydrophobic core formed between the alpha-helix and the beta-sheet play an essential role in alpha-helix induction. This report demonstrates that each ligand does not contribute equally to alpha-helix formation and coordination geometry in the zinc finger peptide.     

Conversion of antennapedia homeodomain to zinc finger-like domain: Zn(II)-induced change in protein conformation and DNA binding

From the standpoint of protein dynamics and metalloprotein design, it is interesting to create an artificial protein which induces structural change and regulates its function by metal-ion binding. We engineered a novel protein, "Antennafinger (Ant-F)", whose structure and function can be controlled with Zn(II), by introducing the consensus sequence of a Cys(2)His(2)-type zinc finger protein into a non-metalloprotein scaffold, an Antennapedia homeodomain mutant (Ant-wt), selected using a motif-searching system. The circular dichroism studies demonstrate that Ant-F has secondary structures similar to Ant-wt and also changes its conformation due to Zn(II)-binding. The optical absorption spectra of the Co(II) complexes of Ant-F and its derivative proteins suggest that the geometry of the metal center of holo-Ant-F is tetrahedral and that the mutated Cys(2)His(2) residues are involved in the complex formation. In addition, the gel mobility shift assay reveals that the DNA binding activity of Ant-F can be regulated through Zn(II)-induced structural alteration. These results provide valuable information about the dynamic properties of proteins and a novel concept for metalloprotein design.     

A synthesis of chiral 1,1,3-trisubstituted 1,2,3,4-tetrahydro-beta-carbolines by the Pictet-Spengler reaction of tryptophan and ketones: conversion of (1R,3S)-diastereomers into their (1S,3S)-counterparts by scission of the C(1)-N(2) bond

The Pictet-Spengler cyclization of the imines (3) prepared by the condensation of L-tryptophan methyl ester (1) and aryl methyl ketones (2), using titanium(IV) isopropoxide as an iminating reagent, quantitatively proceeded, when treated with trifluoroacetic acid (TFA) or formic acid, to provide two diastereomers, that is (1S,3S)-1-aryl-3-isopropoxycarbonyl-1-methyl-1,2,3,4-tetrahydro-beta-carbolines (4) and their (1R,3S)-diastereomers (5), of which the diastereomer ratios varied from 1 to 5 depending on the reaction conditions. The (1R,3S)-diastereomers (5) are thermodynamically more stable than their (1S,3S)-congeners (4), as shown by equilibration experiments in TFA. The conversion of 4 to 5 (also 5 to 4) should occur under acidic conditions by cleavage of the C(1)-N(2) bond with complete retention of configuration at the C-3 chiral center. The low diastereo-selectivity observed in the Pictet-Spengler reaction of 1 and 2 is concluded to be a stereochemical outcome under conditions of kinetic control (lower temperature, shorter reaction time), while the high diastereo selectivity with preferential formation of the more stable isomer (5) is the result of thermodynamically controlled experiments (higher temperature, longer reaction time).     

Diastereoselective imino-aldol condensation of chiral 3-(p-Tolylsulfinyl)-2-furaldimine and ester enolates

(Ss)-3-(p-Tolylsufinyl)-2-furaldimine was synthesized, and condensation of the chiral furaldimine with lithium ester enolates has been examined. The product distribution of the reaction is dependent upon reaction conditions and on the kind of the substituent placed on the esters. Disubstituted ester enolate resulted in the exclusive formation of (4R)-beta-lactam, while unsubstituted, tert-butyl ester enolate preferentially gave (3R)-beta-amino ester. With the monosubstituted ester enolates, the condensation afforded (4R)-beta-lactams and/or (3R)-beta-amino esters as major products. This method has been applied to an efficient route to chiral furyl beta-lactams.     

Propylene carbonate as a solvent for salting-out extraction and subsequent differential pulse polarography

Summary Selective and sensitive procedures are described for the direct differential pulse polarographic determination of antimony(III), indium(III) and cadmium(II) in propylene carbonate. This method was based on the salting-out extraction of their halide complexes into the solvent from acidic aqueous media. The extracted Sb(III), In(III) and Cd(II) complexes exhibit sharp differential pulse polarographic peaks at –0.21 V, –0.63 V and –0.72 V vs. SCE in salted-out propylene carbonate phases respectively. The lower limits of determination are 5.0g for Sb(III), 0.6g for In(III), and 0.2g for Cd(II) in 10 ml of the organic phase. A number of foreign ions are eliminated through both processes of solvent extraction and polarography using propylene carbonate.

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Propylencarbonat als Lösungsmittel für die Fällungs-Extraktion und die nachfolgende Differential-Puls-Polarographie

Zusammenfassung Selektive und empfindliche Verfahren für die direkte Bestimmung von Sb(III), In(III) und Cd(II) in Propylencarbonat mit Hilfe der Differential-Puls-Polarographie wurden beschrieben. Die vorliegende Methode beruht auf der Fällungs-Extraktion der Halogenid-Komplexe aus wäßrig-saurem Medium in das Lösungsmittel. Die extrahierten Komplexe des Sb(III), In(III) und Cd(II) ergeben scharfe Peaks bei –0,21 V, –0,63 V und –0,72 V gegen die Kalomelelektrode in den betreffenden Propylencarbonat-Phasen. Die unteren Grenzen der Bestimmungen liegen bei 5,0g Sb, 0,6g In bzw. 0,2g Cd in 10 ml organischer Phase. Eine Anzahl Fremdionen wird durch die beiden Prozesse der Extraktion und der Polarographie in Propylencarbonat ausgeschaltet.

     

SO+(A2Π-X2Πr) emission produced from a dissociative charge-transfer reaction of He+ with SO2 at thermal energy

The extensive bands observed from the helium afterglow reaction of SO₂ in the 250–540 nm region are assigned to the new SO⁺(A²Π-X²Π_r) system produced from the He⁺/SO₂ dissociative charge-transfer reaction at thermal energy. They had been erroneously interpreted as the SO⁺₂ (C?-X?) system produced from He(2³S)/SO₂ Penning ionization. The spectroscopic constants for the SO⁺A²Π) and SO⁺(X²Π_r) states were determined.     

Multi-element determinations of trace elements in glass by instrumental photon activation analysis

An instrumental photon activation method is reported for multi-element determinations in glass. The concentrations of 17 elements in NBS standard glass can be determined by irradiation with 30-MeV bremsstrahlung and measurement of the resulting γ-rays with a Ge(Li) detector. The average of all relative standard deviations is 2.7%; the relative deviations from the NBS certified values range from 1.4 to 3.4%.     

Reaction of poly(vinyl chloride) with magnesium and grignard reagents

Reaction of poly(vinyl chloride) with magnesium under various conditions was attempted, but poly(vinyl chloride) did not react with magnesium. The reactions of poly(vinyl chloride) with benzylmagnesium chloride and allylmagnesium chloride as Grignard reagents were carried out in tetrahydrofuran at reflux temperature. It was found that the chlorine atoms in the poly(vinyl chloride) were replaced by benzyl and allyl groups by the coupling reaction, and a small amount of Grignard reagent of poly(vinyl chloride) was formed by the magnesium–halogen exchange reaction. The extent of the substitution increased with increasing reaction time and concentration of the Grignard reagent.     

Serially coupled capillary columns supercritical fluid chromatography with midpoint pressure control

Two capillary columns of different polarities were coupled in series by means of a coupling restrictor. The pressure of the first column and the midpoint pressure (between the coupling restrictor and the second column) were controlled independently of each other using two pumps. The selectivity of this separation system was highly dependent on the pressure difference and could be continuously changed between those of two columns. The pressure difference could be changed even in course of separation for fine tuning of the selectivity. Several examples were shown to demonstrate the utility of this method.     

Emission Mössbauer spectroscopic studies of57Fe atoms produced in57Co-labelled trinuclear cobalt-iron halogenoacetate complexes

Mixed-valence states of⁵⁷Fe atoms produced after EC-decay of⁵⁷Co in a series of trinuclear cobalt-iron halogenoacetate complexes, [Co^IIFe ₂ ^III O(CH_3?nX_nCO₂)₆(H₂O)₃] (0≤n≤3, X=Cl, Br, and I), were studied by comparing the results obtained by emission Mössbauer spectroscopy with those observed in absorption Mössbauer spectra of analogous trinuclear iron complexes, [Fe^IIFe ₂ ^III O(CH_3?nX_nCO₂)₆(H₂O)₃]. Some of the emission Mössbauer spectra show a temperature-dependent mixed-valence state as found in the absorption Mössbauer spectra. Others show a somewhat different temperature dependence compared with the absorption Mössbauer spectra. The results were interpreted in terms of after-effects of the EC-decay.