Molecular orbital approach to odor molecules: Normal fatty acids and cyclamenaldehydes

Eight normal fatty acids and 24 cyclamenaldehydes were analyzed based on the molecular orbital theory using Computer-Aided Chemistry Programs (CAChe Programs) with PM3 parameters. We found reactive sites with high values of electrophilic frontier densities (EFDs) at appointed positions in both molecules. EFD is a theoretical index that predicts reactive sites acting as electron donors. A change in the values of EFDs in normal fatty acids would account for the selectivity in the response of a single olfactory receptor cell to the fatty acids. Changes in the values of EFDs at appointed positions of cyclamenaldehydes also correlated with their odor characteristics and intensities. This fact indicates that cyclamenaldehydes have common reactive sites that play a critical role in interactions with a receptor. Changes in their reactivities alter the odor characteristics and intensities of the molecules judged by perfumers, indicating that human discrimination of cyclamenaldehyde odor is determined at the stage of interaction between cyclamenaldehydes and an odor receptor. © 2000 John Wiley & Sons, Inc. Int J Quant Chem 79: 101–108, 2000     

Development of a fluoride-responsive amide bond cleavage device that is potentially applicable to a traceable linker

A fluoride-responsive (FR) amino acid that induces amide bond cleavage upon the addition of a fluoride was developed, and it was applied to an FR traceable linker. By the use of an alkyne-containing peptide as a model of an alkynylated target protein of a bioactive compound, introduction of the FR traceable linker onto the peptide was achieved. Subsequent fluoride-induced cleavage of the linker followed by labeling of the released peptide derivative was also conducted to examine the potential applicability of the FR traceable linker to the enrichment and labeling of alkynylated target molecules.     

Photochemical Behavior of Single‐Walled Carbon Nanotubes in the Presence of Propylamine

This report describes the photochemical behavior of single‐walled carbon nanotubes (SWNTs) in the presence of propylamine. The SWNTs are characterized by absorption and Raman spectroscopy. The spectral changes due to photoirradiation indicate that reactions occur predominantly with the metallic SWNTs and small‐diameter SWNTs. The detection of amine radicalcation species by ESR spectroscopy reveals photoinduced electron transfer from the amine to the excited SWNTs. After exposure of the photoirradiated SWNTs to air, the characteristic spectra were recovered, except for that of the small‐diameter SWNTs. The results suggest that, after photoreduction of the SWNTs, subsequent selective sidewall functionalization of the small‐diameter SWNTs occurs.     

A Study of the Solvation Structure of l‐Leucine in Alcohol–Water Binary Solvents through Molecular Dynamics Simulations and FTIR and NMR Spectroscopy

The solvation structures of l ‐leucine (Leu) in aliphatic‐alcohol–water and fluorinated‐alcohol–water solvents are elucidated for various alcohol contents by using molecular dynamics (MD) simulations and IR, and ¹H and ¹³C NMR spectroscopy. The aliphatic alcohols included methanol, ethanol, and 2‐propanol, whereas the fluorinated alcohols were 2,2,2‐trifluoroethanol and 1,1,1,3,3,3‐hexafluoro‐2‐propanol. The MD results show that the hydrophobic alkyl moiety of Leu is surrounded by the alkyl or fluoroalkyl groups of the alcohol molecules. In particular, TFE and HFIP significantly solvate the alkyl group of Leu. IR spectra reveal that the Leu C?H stretching vibration blueshifts in fluorinated alcohol solutions with increasing alcohol content, whereas the vibration redshifts in aliphatic alcohol solutions. When the C?H stretching vibration blueshifts in the fluorinated alcohol solutions, the hydrogen and carbon atoms of the Leu alkyl group are magnetically shielded. Consequently, TFE and HFIP molecules may solvate the Leu alkyl group through the blue‐shifting hydrogen bonds.     

In‐Depth Understanding of the Chemical Properties of Rarely Explored Carbide Cluster Metallofullerenes: A Case Study of Sc2C2@C3v(8)‐C82 that Reveals a General Rule

The chemical properties of carbide‐cluster metallofullerenes (CCMFs) remain largely unexplored, although several new members of CCMFs have been discovered recently. Herein, we report the reaction between Sc₂C₂@C_3v(8)‐C₈₂, which is viewed as a prototypical CCMF because of its high abundance, and 3‐triphenylmethyl‐5‐oxazolidinone ( 1 ) to afford the corresponding pyrrolidino derivative Sc₂C₂@C_3v(8)‐C₈₂(CH₂)₂NTrt ( 2 ; Trt=triphenylmethyl). Single‐crystal X‐ray crystallography studies of 2 revealed that the reaction takes place at a [6,6]‐bond junction, which is directly over the encapsulated C₂ unit and is far from either of the two scandium atoms. On the basis of theoretical calculations and by considering previously reports, we have found that a hexagonal carbon ring on the cage of Sc₂C₂@C_3v(8)‐C₈₂ is highly reactive toward different reagents due to the overlap of high p‐orbital axis vector (POAV) angles and large LUMO coefficients. We propose that this highly concentrated area of reactivity is generated by the encapsulation of the Sc₂C₂ cluster because this region is absent from the empty fullerene C_3v(8)‐C₈₂. Moreover, the absorption and electrochemical results confirm that derivative 2 is more stable than pristine Sc₂C₂@C_3v(8)‐C₈₂, thus illuminating its potential applications.     

Structure of an unsaturated fatty acid with unique vicinal dimethyl branches isolated from the Okinawan soft coral of the genus Sinularia

A new unsaturated fatty acid with unique vicinal dimethyl branches was isolated from the Okinawan soft coral of the genus Sinularia. The structure of the compound was determined based on the results of spectroscopic analysis and chemical conversion. The absolute configuration was deduced by applying the Ohrui-Akasaka method.     

Switchable antenna: a star-shaped ruthenium/osmium tetranuclear complex with azobis(bipyridine) bridging ligands

A star-shaped Ru/Os tetranuclear complex, in which a central Os unit is linked to three peripheral Ru units by 4,4'-azobis(2,2'-bipyridine) (azobpy) bridging ligands, was prepared to examine the unique photodynamics regulated by its redox state. The Ru/Os tetranuclear complex exhibits Ru-based luminescence at 77 K, whereas the three-electron reduction (one for each azobpy) of the Ru/Os complex results in luminescence from the Os unit. The photoexcited state of the Ru/Os complex rapidly decays into low energy metal-to-ligand charge-transfer states, in which the excited electron is localized in the azobpy ligand in the form of azobpy(.-). Upon the one-electron reduction of the azobpy ligands, the above-mentioned low-energy states become unavailable to the photoexcited complex. As a result, an energy transfer from the Ru-based excited state to the Os-based excited state becomes possible. Ultrafast transient absorption measurements revealed that the energy transfer process consists of two steps; intramolecular electron transfer from the terminal bipyridine ligand (bpy(.-)) to form azobpy(2-) followed by a metal-to-metal electron transfer. Thus, the Ru/Os tetranuclear complex collects light energy into the central Os unit depending on the redox state of the bridging ligands, qualifying as a switchable antenna.     

Synthesis, structures, and properties of group 9- and group 10-group 6 heterodinuclear nitrosyl complexes

The reaction of the group 9 bis(hydrosulfido) complexes [Cp*M(SH)2(PMe3)] (M=Rh, Ir; Cp*=eta(5)-C 5Me5) with the group 6 nitrosyl complexes [Cp*M'Cl2(NO)] (M'=Mo, W) in the presence of NEt3 affords a series of bis(sulfido)-bridged early-late heterobimetallic (ELHB) complexes [Cp*M(PMe3)(mu-S)2M'(NO)Cp*] (2a, M=Rh, M'=Mo; 2b, M=Rh, M'=W; 3a, M=Ir, M'=Mo; 3b, M=Ir, M'=W). Similar reactions of the group 10 bis(hydrosulfido) complexes [M(SH)2(dppe)] (M=Pd, Pt; dppe=Ph 2P(CH2) 2PPh2), [Pt(SH)2(dppp)] (dppp=Ph2P(CH2) 3PPh2), and [M(SH)2(dpmb)] (dpmb=o-C6H4(CH2PPh2)2) give the group 10-group 6 ELHB complexes [(dppe)M(mu-S)2M'(NO)Cp*] (M=Pd, Pt; M'=Mo, W), [(dppp)Pt(mu-S)2M'(NO)Cp*] (6a, M'=Mo; 6b, M'=W), and [(dpmb)M(mu-S)2M'(NO)Cp*] (M=Pd, Pt; M'=Mo, W), respectively. Cyclic voltammetric measurements reveal that these ELHB complexes undergo reversible one-electron oxidation at the group 6 metal center, which is consistent with isolation of the single-electron oxidation products [Cp*M(PMe3)(mu-S)2M'(NO)Cp*][PF6] (M=Rh, Ir; M'=Mo, W). Upon treatment of 2b and 3b with ROTf (R=Me, Et; OTf=OSO 2CF 3), the O atom of the terminal nitrosyl ligand is readily alkylated to form the alkoxyimido complexes such as [Cp*Rh(PMe3)(mu-S)2W(NOMe)Cp*][OTf]. In contrast, methylation of the Rh-, Ir-, and Pt-Mo complexes 2a, 3a, and 6a results in S-methylation, giving the methanethiolato complexes [Cp*M(PMe3)(mu-SMe)(mu-S)Mo(NO)Cp*][BPh 4] (M=Rh, Ir) and [(dppp)Pt(mu-SMe)(mu-S)Mo(NO)Cp*][OTf], respectively. The Pt-W complex 6b undergoes either S- or O-methylation to form a mixture of [(dppp)Pt(mu-SMe)(mu-S)W(NO)Cp*][OTf] and [(dppp)Pt(mu-S) 2W(NOMe)Cp*][OTf]. These observations indicate that O-alkylation and one-electron oxidation of the dinuclear nitrosyl complexes are facilitated by a common effect, i.e., donation of electrons from the group 9 or 10 metal center, where the group 9 metals behave as the more effective electron donor.     

Synthesis of selenylfullerene with selenium-containing dibenzo[b,g]cyclooctane moiety

The photochemical reaction of C₆₀ with selenium-containing bicyclooctanes affords for the first time the selenylfullerenes. The derivatives were characterized by mass, UV-vis absorption, NMR spectroscopy, and X-ray crystallographic analysis.