A fluorescent-labeled oligopeptide for monitoring PKA-mediated phosphorylation

A fluorescent-labeled oligopeptide (DACM-CLRRASLK-fluorescein), containing a consensus amino acid sequence (RRXSL) of cyclic AMP (cAMP) dependent protein kinase A (PKA) substrate-proteins, was designed. The fluorescent peptide was a good substrate of PKA, and the phosphorylation of its serin residue caused an intensive change in fluorescent intensity. We expect that the peptide will be useful as a fluorescent indicator for monitoring PKA activity in living cells.     

The fifth overtones of the C-H stretching vibrations and the bond lengths in some heterocyclic compounds

The fifth overtones of the C-H stretching vibrations of pyridine, pyrazine, thiophene, 3-methylthiophene, furan and pyrrole in the liquid state have been observed by a thermal lens technique. It was found that their frequency shifts from that of benzene are proportional to the decrease in the relevant C-H bond length.     

Proximity Effects in Acid and Base-Catalysed Ether Formation

When heated with sodium ethoxide in ethanol 7-methylidenebicyclo[3.3.1]nonan-3-endo-ol (endo- 1 ) is converted into 1-methyl-2-oxa-adamantane ( 3 ). This reaction involves nucleophilic addition of a hydroxy group to an unactivated olefinic bond. Formation of the cyclic ether 3 also takes place when endo- 1 is heated in aqueous ethanol. This electrophilic addition is strongly catalysed by weak acids and suppressed by weak bases. These unusual reactions proceed more slowly with 7-methylbicyclo[3.3.1]non-6-en-3-endo-ol (endo- 2 ) and can be ascribed to a proximity effect. This follows from the IR . and NMR . spectra of endo- 1 and endo- 2 which show strong intramolecular hydrogen (OH-π) bonding. The unsaturated endo- and exo-alcohols 1 and 2 , respectively, undergo only exo-complexation with silver ion.     

Electrophoretic mobility-assisted identification of proteins by nanoelectrospray capillary electrophoresis/mass spectrometry under methanolic conditions

A novel method for electrophoretic mobility-assisted identifications of proteins, using capillary electrophoresis/mass spectrometry (CE/MS) under methanolic conditions, was developed. The number of functional groups of the enzymatic digest peptides was estimated from a single run CE/MS analysis and utilized as an additional tag for database searching in addition to the mass map of the peptides. The additional amino acid information thus obtained can improve the confidence level of the protein identification. The database searching software algorithm ProFound was modified to accept the tag, based on this new concept. In this study, optimization of the CE/MS conditions for the estimation of basic functional groups was performed as an example. An accurate value of the number of such functional groups was obtained from CE characteristics when methanolic buffer (methanol/formic acid/water = 60:20:20) was used, via an excellent correlation (r = 0.997) between the number of functional groups of the peptides and [MW((2/3))]. The mass spectrometry sensitivity was also improved when using the methanolic buffer in comparison with that obtained using aqueous 1% formic acid buffer. The identification of a protein of Saccharomyces cerevisiae, which was separated by two-dimensional electrophoresis, was performed using the methanolic buffer in combination with sheathless nanoelectrospray CE/MS. A protein spot that had not been identified by MALDI-TOFMS and LC/MS/MS was successfully identified using this new method.     

Highly (Z)-selective hydrosilylation of terminal alkynes catalyzed by a diphosphinidenecyclobutene-coordinated ruthenium complex: application to the synthesis of (Z,Z)-bis(2-bromoethenyl)arenes

[reaction: see text] Complex 1 bearing a diphosphinidenecyclobutene ligand (DPCB-OMe) catalyzes highly stereoselective hydrosilylation of diethynylarenes with HSiMe2Ph to afford (Z,Z)-bis(2-silylethenyl)arenes. Treatment of the hydrosilylation products with N-bromosuccinimide causes bromodesilylation in a stereospecific manner, giving (Z,Z)-bis(2-bromoethenyl)arenes in high geometrical purity (>98%).     

Surface characterization by underpotential deposition: Lead on gold surfaces

The kinetics of chelation of Pb(II), Zn(II) and Cd(II) with the ligand EDTA have been followed at the realistic trace concentration level 10^?8–10^?7M for both reactants in sea water and model solutions of its major salinity components by differential pulse stripping voltammetry. In this manner the specific influences of the salinity components on the formation rate constants [having in sea water for PbEDTA the order of 3×10³ and for the EDTA chelates of Zn(II) and Cd(II) of 3×10² l M^?1 s^?1] could be determined. The measurements emphasize the pronounced specific influences of Ca(II) on the kinetics and course of the trace metal chelation in media where this alkaline earth ion is present in substantial excess to organic chelating agents. The experiments with EDTA are to be regarded as a close simulation of the chelation processes occurring for the trace metals studied by components with suitable chelation power of dissolved organic matter (DOM) in the sea and the resulting conclusions on the mechanism are thus of general significance.