GC-MS,LC-MS/MS,Docking and Molecular Dynamics Approaches to Identify Potential SARS-CoV-2 3-Chymotrypsin-Like Protease Inhibitors from Zingiber officinale Roscoe

This study aims to identify and isolate the secondary metabolites of Zingiber officinale using GC-MS, preparative TLC, and LC-MS/MS methods, to evaluate the inhibitory potency on SARS-CoV-2 3 chymotrypsin-like protease enzyme, as well as to study the molecular interaction and stability by using docking and molecular dynamics simulations. GC-MS analysis suggested for the isolation of terpenoids compounds as major compounds on methanol extract of pseudostems and rhizomes. Isolation and LC-MS/MS analysis identified 5-hydro-7, 8, 2′-trimethoxyflavanone (9), (E)-hexadecyl-ferulate (1), isocyperol (2), N-isobutyl-(2E,4E)-octadecadienamide (3), and nootkatone (4) from the rhizome extract, as well as from the leaves extract with the absence of 9. Three known steroid compounds, i.e., spinasterone (7), spinasterol (8), and 24-methylcholesta-7-en-3β-on (6), were further identified from the pseudostem extract. Molecular docking showed that steroids compounds 7, 8, and 6 have lower predictive binding energies (MMGBSA) than other metabolites with binding energy of −87.91, −78.11, and −68.80 kcal/mole, respectively. Further characterization on the single isolated compound by NMR showed that 6 was identified and possessed 75% inhibitory activity on SARS-CoV-2 3CL protease enzyme that was slightly different with the positive control GC376 (77%). MD simulations showed the complex stability with compound 6 during 100 ns simulation time.     

Synthesis and antibacterial evaluation of new N- and S-glycosides analogues with dinitrophenyl-substituted heterocyclic bases

Four N- and S-glycosides 13–16 having nucleobases 7–12 binding to sugar molecules from one side and to 3,5-dinitrophenyl moieties from another side were synthesized from 3,5-dinitrobenzoic acid 2. The synthetic intermediates, hydrazide 5 and thiosemicarbazide 6 regarded as important key compounds for the synthesis of nucleobases 7–12, each was obtained by two approaches. Structures of synthesized compounds were determined spectroscopically. Antibacterial activities for synthetic intermediates and glycosides were assessed using the paper disk diffusion method against Gram-negative bacteria: Pseudomonas aeruginosa, Pseudomonas fluorescens, and Escherichia coli and Gram-positive bacteria: Bacillus cereus and Staphylococcus aureus. Some of the synthetic compounds showed variant activity against some of the microorganisms tested. Nucleobases 8–10 and 12 showed moderate to slight activity against microorganisms under test at relatively high concentration, while the N-glycosides 14 and 15 exhibited persistent effect even at lower concentrations. Commercially available antibiotics polymyxine and oxytetracycline were used as positive controls.     

Synthesis and electrochemical characterization of nitrogen-doped and nitrogen–phosphorus-doped multi-walled carbon nanotubes

Nitrogen-doped and nitrogen–phosphorus-doped multi-walled carbon nanotubes (N-MWCNTs and N–P-MWCNTs, respectively) were fabricated by chemical vapor deposition and characterized using scanning electron microscopy and transmission electron microscopy in combination with energy dispersive X-ray spectroscopy and Raman spectroscopy. The electrochemical response of N-MWCNTs and N–P-MWCNTs towards ferrocyanide/ferricyanide was initially studied. The findings exhibit weakening of electrochemical response and sensitivity of nanotubes with phosphorus doping, and thus, within the composite films tested, those consist exclusively of N-MWCNTs exhibit the greatest electrocatalytic activity. N–P-MWCNT film was further applied for individual electrochemical analysis of ascorbic acid (AA), uric acid (UA), and dopamine (DA), and lower limits of detections of 11.6, 7.8, and 1.9 μM were estimated, respectively. The findings demonstrate that AA does not interfere with UA, but considerable interference of AA in analysis of DA was observed. Thus, the simultaneous analysis of AA, UA, and DA on N–P-MWCNTs appears to be restricted.     

Effect of defects and surface anchoring on the phase behavior of chiral smectic liquid crystals

The influence of defects and surface effects on the stability of phenomena accompanying phase transitions, mainly coexistence phenomenon, has been studied. Experimental measurements were carried out by varying the cell thickness and using simple experimental on chiral smectic liquid crystal product. The analysis of the results with different cell thickness leads us to interpret the anomaly shown by our product related to impact of defects and surface effects. Moreover, the phase transition is affected by the trace of defects for thick cell and by the surface effect for thin cell. These effects have the same role as an electric local field which can induce phase transition.     

Generalized magneto-thermoelastic half-space with diffusion under initial stress using three-phase-lag model

The present paper is aimed at studying the effect of initial stress and the magnetic field on thermoelastic interactions in an isotropic, thermally and electrically conducting half-space whose surface is subjected to mechanical and thermal loads. The formulation is applied under the thermoelasticity theory with three-phase-lag, proposed by Choudhuri (2007 Choudhuri, S. K. R. (2007). On a thermoelastic three-phase-lag model. Journal of Thermal Stresses 30:231–238. doi:10.1080/01495730601130919[Taylor & Francis Online], [Web of Science ®] [Google Scholar]). The normal mode analysis is used to obtain the expressions for the variables considered. Numerical and computations are performed for a specific material and the results obtained are represented graphically. Comparisons are made with the results predicted by different theories Lord–Shulman theory (L–S), the theory of thermoelasticity type III (G-N III) and the three-phase-lag model (3PHL) in the absence and presence of the initial stress and magnetic field.     

Cross-link network of polydimethylsiloxane via addition and condensation (RTV) mechanisms. Part I: Synthesis and thermal properties

A series of highly cross-linked polysiloxane was synthesised via hydrosilylation and condensation reaction. Structural identification using Fourier Transform Infrared (FTIR) and ¹H-NMR confirmed their chemical structures. Their thermal and, mechanical properties, and crystallinity, were analysed and related to the level of cross-link density. These systems displayed elevated thermal and hardness properties at an increased cross-link density. Furthermore, the level of crystallinity was reduced as displayed by XRD analysis. Along with this observation, the calculated fractional free volume (FFV) showed a decreasing trend leading to the ‘densification’ effect. It was envisaged that the linear polysiloxane chain segments aligned parallel to each other in a triclinic crystal system to generate a crystalline domain. The spacing between these stacking chains was found to be about 7.2 Å as measured from simulated XRD pattern.     

Chemical equilibria and sequential extractive spectrophotometric determination of selenium(IV) and (VI) using the chromogenic reagent 4,4′-dichlorodithizone

The chromogenic reagent 4,4′-dichloro(3-mercapto-1,5-diphenylformazan), Cl₂H₂D _Z , forms a yellow–red-coloured complex with selenium(IV). The produced complex species was extracted quantitatively into n-hexane, and its absorbance was measured at 416?nm. The chemical composition of the extracted selenium(IV)-Cl₂H₂D _Z chelate and the molar absorptivity at 416?nm were found to be [SeO (Cl₂HD _Z )₂] and 9?×?10⁴?L?mol^?1?cm^?1, respectively. The values of the extraction constants (K _D, K _ex, β) enable a convenient application of the proposed system for the liquid–liquid extraction procedure and sequential spectrophotometric determination of traces of inorganic selenium(IV) and/or selenium(VI) after reduction of the later to selenium(IV) with HCl (6?M). Beer's law and Ringbom's plots were obeyed in the concentration range 0.01–20 and 0.5–19?µg?mL^?1 of selenium(IV), respectively, with a relative standard deviation of 2.2%. The proposed method has been successfully applied to the determination of selenium(IV) or (VI) and total inorganic selenium(IV) and (VI) in tap and freshwater samples.     

Dielectric relaxation spectroscopy and electro-optical studies of phase behaviour of a chiral smectic liquid crystal

Dielectric relaxation processes in various phases of a chiral smectic liquid crystal compound have been investigated over a wide range of frequencies from 10 to 300 kHz. Dielectric spectroscopy reveals the existence of two relaxation frequencies corresponding to the ferroelectric and ferrielectric Goldstone modes in the range of temperature where two different phases coexist. This phenomenon of coexistence is examined with respect to the cell thickness and reversal temperature.     

Historical variations of Bera Lake (Malaysia) sediments geochemistry using radioisotopes and sediment quality indices

The Bera Lake basin is a lacustrine mire system and the largest natural lake in Peninsular Malaysia. Three cores were collected from the lake sediments in order to assess sediment quality and ecological risks for aquatic life and human health. An index analysis approach (C _f , C _d , E _r , and IR) and fallout ²¹⁰Pb and ¹³⁷Cs radioisotopes were applied to assess the impacts of environmental evolutionary changes. Sediment chronology was determined using the Constant Rate of Supply model with the resultant ages verified by ¹³⁷Cs horizons. Although the general contamination factors indicate low risk conditions in Bera Lake the risks associated with individual layers ranged from moderate to considerable. Five deforestation phases can be identified in the dated sediment cores with distinct variations in heavy metal influxes since 1972. These phases are in excellent agreement with the dates of land clearance and development projects undertaken over the past four decades. This study has highlighted the capability of contamination factors and chronological methods in environmental evolutionary studies where catchments have experienced extensive land use changes. The destiny of heavy metal influxes into a lake can also be revealed using this methodology.     

A New Trend on Biosensor for Neurotransmitter Choline/Acetylcholine—an Overview

Technology always has been an indispensible part in the development of biosensors. The performance of biosensors is being tremendously improved using new materials as transducer as well as binding material in their construction. The use of new materials allowed innovation on transduction technology in biosensor preparations. Because of the submicron dimensions of these sensors, simple and rapid analyses in vitro as well as in vivo are now possible. Portable instruments capable of analysing multiple components are becoming available, too. Sensors that provide excellent temporal and spatial resolution for in vivo monitoring such as for measurement of neurotransmitters have become prominent. The interest to improve the stability, sensitivity and selectivity of the sensors is paramount. This study tries to give an overview of the present status of the material-based biosensor design and new generation of choline/acetylcholine neurotransmitter biosensors.