Cu nuclear spin-spin relaxation in YBa2Cu3O6.98 and YBa2Cu4O8

We have measured the temperature (T) dependence of the transverse relaxation rate (T _G ^–1 ) of the Cu(1) nuclear spin in YBa₂Cu₃O_6.98 (T _c=92 K) and YBa₂Cu₄O₈ (T _c=82 K). From the scaling ratio ofT _G ^–2 (Cu1) toT _G ^–2 (Cu2), we have estimated the strength of a covalent bonding between the CuO₂ plane and the CuO chain to be B0.38×A _zz. The experimentalT _G ^–1 (Cu1) in YBa₂Cu₄O₈ was of the same order of magnitude as the estimated one fromT _G ^–1 (Cu2). These results appear to indicate that the electrons in the CuO₂ plane fairly spread out of the plane in both compounds.     

Antitumor agents. V. Synthesis and antileukemic activity of E-ring-modified (RS)-camptothecin analogues.

Several E-ring-modified analogues of (RS)-camptothecin were synthesized by total synthesis via Friedl?nder condensation and evaluated for cytotoxicity and antitumor activity against P388 mouse leukemia cells. Among them, (RS)-20-deoxyamino-7-ethyl-10-methoxycamptothecin (25c) was found to be more active than (RS)-camptothecin (1) in the in vivo assay.     

Molecular dynamics of homogeneous nucleation in the vapor phase of Lennard-Jones. III. Effect of carrier gas pressure

A molecular dynamics simulation of vapor phase nucleation has been performed with 40,000 Lennard-Jones particles for the target gas and 0-160,000 particles for the carrier gas. Three carrier gas models are adopted, including a soft-core model, a Lennard-Jones model, and a modified Lennard-Jones model in which the attractive interaction can be adjusted. The effect of the carrier-gas pressure is assessed through computing and comparing the rate of nucleation and cluster size distribution. It is found that the effect of the carrier-gas pressure can be strongly dependent on the carrier-gas model. A positive effect (enhancement of the nucleation rate) is found with the soft-core potential model, whereas negligible effect is found with the Lennard-Jones potential model. For the modified Lennard-Jones potential with a weak attractive interaction, the carrier-gas effect is positive. However, the effect is negligible with a stronger attractive interaction between the target and carrier-gas particles. A reason for the negligible effect is that the carrier-gas particles are adsorbed on the cluster surface when the density of target and carrier-gas particles are comparable. When the density of carrier-gas particles are four times that of the target particles, the carrier-gas particles tend to mix with the target particles in the clusters.     

Extended study of molecular dynamics simulation of homogeneous vapor-liquid nucleation of water

Using the simple point charge/extended water model, we performed molecular dynamics simulations of homogeneous vapor-liquid nucleation at various values of temperature T and supersaturation S, from which the nucleation rate J, critical nucleus size n(*), and the cluster formation free energy DeltaG were derived. As well as providing lots of simulation data, the results were compared with theories on homogeneous nucleation, including the classical, semi-phenomenological, and scaled models, but none of these gave a satisfactory explanation for our results. It was found that two main factors made the theories fail: (1) The average cluster structure including the nonspherical shape and the core structure that is not like the bulk liquid and (2) the forward rate which is larger than assumed by the theories by about one order of magnitude. The quantitative evaluation of these factors is left for future investigations.     

Thermodynamic stability of type-I and type-II clathrate hydrates depending on the chemical species of the guest substances

The free energy differences are calculated for various type-I and type-II clathrate hydrates based on molecular-dynamics simulations, thereby evaluating the thermodynamic stability of the hydrates depending on the chemical species of the guest substances. The simulation systems consist of 27 unit cells, that is, 1242 water molecules and 216 guest molecules for type-I hydrates, and 3672 water molecules and 648 guest molecules for type-II hydrates. The water molecules are described by TIP4P potential, while the guest molecules are described by one-site Lennard-Jones potential, U=4epsilon{(sigma/r)12-(sigma/r)6}, where U is the potential energy, r is the particle distance, sigma is the particle diameter, and epsilon is the energy well depth. The optimal values of sigma that yield the minimum free energy (the best thermodynamic stability) were determined to be 0.39 nm for the type-I hydrates and 0.37 nm for the type-II hydrates.     

An EPR Study on Intramolecular Spin Exchange and Rotational Mobility of Nitroxides Linked by a Longchain

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Active Species Generated by a Pulsed Arc Electrohydraulic Discharge Plasma Channel in Contaminated Water Treatments

Pulsed arc electrohydraulic discharge (PAED) direct plasma technique was applied for various types of contaminated water treatment. The experimental system consists of a spark-gap switch type pulse power supply (0.5 kJ/pulse) and a 3 L stainless steel reactor with eccentrically configured rod-to-rod electrodes. The current and voltage waveforms are fundamentally different for different conductivity water. Double pulse current discharges were observed for pond water with relatively higher conductivity (637 mS/m) while a single pulse current discharge was observed for lake water with relatively lower conductivity (78 mS/m). From the optical emission spectrum and UV dosimeters, UV-A, UV-B, excited molecules and radicals including N₂*, O, H, OH, O₃ etc. were observed during the discharge period. Both optical emission and UV intensities in pond water are slightly lower than lake water. The decay time of the UV-A, N₂*, OH, H and O radicals were around 0.6 ms, where the discharge period ended around 0.4 ms. The results indicate that the radicals existed longer than the discharge period. The pH, dissolved oxygen and conductivity were changed during the course of PAED treatment. The ions and radicals such as H·, O·, H⁺, OH· etc. generated by PAED may cause alterations density decay time and the active species in water were present for a longer period. The reduction of total organic carbon (TOC) in pond water reached 80% after 5 min of PAED treatment. Based on local thermal plasma equilibrium (LTE) model, LTE thermal plasma chemical composition model for 1 mol water vapour was used to compare to present experiments. PAED discharge in contaminated pond water generated peak concentration of OH = 28% and O₂H = 0.012% mol in gas-phase and migrated to water-phase via gas–liquid interfaces generated by arc and micro-bubbles to form more stable O₃, H₂O₂, H₂ and O₂. The model suggested that the reduction of TOC occurred in gas/plasma phases or liquid-phase side of gas liquid interfaces.     

FIM observation of A Ga(3 × 3) superstructure on W and Mo(011)

FIM observation has revealed that the atomic arrangement of a monoatomic Ga layer on the W and Mo(011) plane is the (3 × 3) superstructure formed by zigzag chains of Ga atoms. Observed images indicate that the Ga atoms of the zigzag chains are displaced in the [01̄1] or [011̄] direction from an open W lattice site to the position where the displaced atom is stabilized by contacting three substrate W atoms.     

Current performance gains from utilizing the GPU or the ASIC MDGRAPE‐3 within an enhanced Poisson Boltzmann approach

Scientific applications do frequently suffer from limited compute performance. In this article, we investigate the suitability of specialized computer chips to overcome this limitation. An enhanced Poisson Boltzmann program is ported to the graphics processing unit and the application specific integrated circuit MDGRAPE‐3 and resulting execution times are compared to the conventional performance obtained on a modern central processing unit. Speed Up factors are measured and an analysis of numerical accuracy is provided. On both specialized architectures the improvement is increasing with problem size and reaches up to a Speed Up factor of 39 × for the largest problem studied. This type of alternative high performance computing can significantly improve the performance of demanding scientific applications. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2009     

Comprehensive GMO detection using real-time PCR array: single-laboratory validation

We have developed a real-time PCR array method to comprehensively detect genetically modified (GM) organisms. In the method, genomic DNA extracted from an agricultural product is analyzed using various qualitative real-time PCR assays on a 96-well PCR plate, targeting for individual GM events, recombinant DNA (r-DNA) segments, taxon-specific DNAs, and donor organisms of the respective r-DNAs. In this article, we report the single-laboratory validation of both DNA extraction methods and component PCR assays constituting the real-time PCR array. We selected some DNA extraction methods for specified plant matrixes, i.e., maize flour, soybean flour, and ground canola seeds, then evaluated the DNA quantity, DNA fragmentation, and PCR inhibition of the resultant DNA extracts. For the component PCR assays, we evaluated the specificity and LOD. All DNA extraction methods and component PCR assays satisfied the criteria set on the basis of previous reports.