Spatially constrained minimization of macromolecules

A structural minimization procedure which converges rapidly and restricts the atomic shifts is outlined. It is implemented by adding a harmonic penalty term for the displacements of atomic positions and resetting the reference coordinates with respect to which the constraints are computed during the minimization. The resetting serves to reduce the constraint energy of the minimized structure to negligible levels.     

Chemistry of the phenoxathiins IV. Synthesis of 9-substituted 1 -azaphenoxathiins

In an extension of recently reported syntheses of the I-azaphenoxathiin nucleus as well as several 7-substituted analogs, the synthesis of several 9-substituted members of this series is now reported. In addition, the first ¹³C-nmr spectral evidence of an interaction between a sulfur atom and the oxygen of an ortho-nilro group which has been previously observed only in X-ray erystallographic studies is also described. The possible consequences of this interaction on the reaction pathway leading to the cyclization of the 9-substituted J-azaphenoxathiin nucleus is also presented.     

Assignments of carbon NMR resonances for microcrystalline ubiquitin

Solid-state NMR 2D spectroscopy was used to correlate carbon backbone and side-chain chemical shifts for uniformly (13)C,(15)N-enriched microcrystalline ubiquitin. High applied field strengths, 800 MHz for protons, moderate proton decoupling fields, 80-100 kHz, and high magic angle sample spinning frequencies, 20 kHz, were used to narrow the most of the carbon line widths to 0.5-0.8 ppm. Homonuclear magnetization transfer was effected by matching the proton RF field to the spinning frequency, the so-called dipolar-assisted rotational resonance (DARR) (Takegoshi, K.; Nakamura, S.; Terao, T. Chem. Phys. Lett. 2001, 344, 631-637), and a mixing time of 20 ms was used to maximize the intensity of one-bond transfers between carbon atoms. This polarization transfer sequence resulted in roughly 14% transfer efficiencies for directly bonded carbon pairs and 4% transfer efficiencies for carbons separated by a third carbon. With this simple procedure, the majority of the one-bond correlations was observed with moderate transfer efficiencies, and many two-bond correlations were also observed with weaker intensities. Spin systems could be identified for more than half of the amino acid side chains, and site-specific assignments were readily possible via comparison with 400 MHz (15)N-(13)C-(13)C correlation spectroscopy (described separately).     

Organically modified sols as pseudostationary phases for microchip electrophoresis

We demonstrate that the selectivity of microchip electrophoresis separations is greatly improved by the presence of organically modified silica (Ormosil) sols in the run buffer. A negatively-charged N-(trimethoxysilylpropyl)ethylenediamine triacetic-acid (TETT)-based sol is used for improving the selectivity between nitroaromatic explosives and a methyltrimethoxysilane (MTMOS)-based sol is employed for enhancing the microchip separation of environmental pollutants, aminophenols. These sols are added to the run buffer and act as pseudostationary phases. Their presence in the run buffer changes the apparent mobility of studied solutes, and leads to a higher resolution. The observed mobilities changes reflect the interactions between the Ormosil sols and the solutes. Relevant experimental variables have been characterized and optimized. The diverse chemistry of Ormosil sols should be extremely useful for tailoring the selectivity of a wide range of electrophoresis microchip separations.     

Synthesis of 2,3-dihydropyrazolo[5,1-b]thiazoles via a tandem condensation sulfur-extrusion reaction

2,3-Dihydropyrazolo[5,1-b]thiazoles 3 are the first representatives of a heterocyclic system, which are conveniently prepared by heating 3-aminorhodanines 1 with ethyl 2-bromo-3,3-diethoxypropionate ( 2 ), via a tandem condensation-sulfur extrusion reaction.     

Secondary metabolites of the coelenterate echinopora lamellosa

The marine coelenterate Echinopora lamellosa (class Anthozoa, family Scleractinidae) was found to contain a number of unprecedented secondary metabolites which were isolated and identified as smilagenin (I), neodunol methyl ether (II), glycyrrhetic acid (III), 3β-acetoxyglycyrrhetic acid (IV), and 3β-acetoxy-11-deoxoglycyrrhetic acid (V). The structure of neodunol methyl ether was confirmed and its absolute configuration determined by the x-ray diffraction method.     

Smenoqualone a novel sesquiterpenoid from the marine sponge Smenospongia sp.

Smenoqualone, a novel quinonic terpenoid with a rearranged drimane skeleton was isolated from a marine sponge Smenospongia sp. The stereostructure was determined by detailed analyses of ¹H and ¹³C NMR spectra, ¹H-¹H COSY, ¹H-¹³C correlations via HMQC, HMBC and NOE difference NMR experiments.     

Experimental study of the concentration dependence of the soret coefficient by thermal field-flow fractionation: the case of polystyrene in decalin

Summary Thermal field-flow fractionation separates polymers with high selectivity according to their Soret coefficient,S _τ, hence, according to their molar mass, and therefore consitutes an efficeint physicochemical tool for the determination of the Soret coefficient of a given polymer in the carrier liquid from its retention time. However, the polymer concentration in the sample influences the retention time and, hence, the value ofS _τ derived from it. An experimental study of the influence of sample concentration on retention,S _τ, and peak shape was performed for the polystyrene-decalin system over a relatively large temperature domain and for various molar masses. It is found that the retention time and the value ofS _τ increase with increasing sample concentration, the more so as the cold wall temperature is lower. This appears to be in contradiction with the general non-equilibrium thermodynamic expression derived for polymer-solvent systems with positive second virial coefficients, such as the present system over the temperature range investigated. There seems to be a temperature for which the dependence ofS _τ on sample concentration vanishes. This temperature is about 375 K for the polystyrene-decalin system. As the sample concentration increases, the peak barycentre and the standard deviation increases. As the peaks are fronting, the skewness is negative and becomes more negative as the sample concentration increases. The peak skewness appears to be a good indicator of the onset of sample concentration effects. The threshold concentration, for which these effects begin to become significant, decreases with increasing molar mass.     

Nachweis von C (15)-epimeren Coleonen C und D in der Natur und ihre Bedeutung für den sterischen Verlauf der Bildung des Spirocyclopropanrings

Natural Occurrence of C(15)-Epimeric Coleons C and D and its Significance to the Stereochemistry of the Formation of a Spirocyclopropanring In a previous paper some evidence was presented for a predominant occurrence of epimeric coleons ((15S)-coleon C ((15 S)- 1a ), and (15S)-coleon D ((15S)- 2a )) in Plectranthus lanuginosus [1], The proposed structures have now been proven by careful comparison of their physical data with those of the already described C(15)-epimers whose structures were deduced by X-ray analysis of a derived cis-diketone 3 [5], Examination of the epimeric purity of coleons possessing a 2-hydroxy-1-methylethyl side-chain (coleons C , D , H , I , I ′ and derivatives) isolated from seven different species (Coleus, Plectranthus and Solenostemon) has shown that these coleons always occur as a mixture of C(15)-epimers, although in most cases with one predominant epimer. The consequences for the stereochemistry of the postulated in vivo formation of the methyl-substituted spirocyclopropane substructure is discussed.     

Some diels—alder reactions of η1-bonded cyclopentadienylmetal compounds

Bis(cyclopentadienyl)mercury readily undergoes Diels—Alder reactions with RCCR (R = CO₂Me or CF₃), CF₃CFCFCF₃, CF₃CFCF₂, (CF₃)₂CC(CN)₂, C₂(CN)₄ and Ph$\text{NCONNC}$O to give stable adducts characterised by¹H, ¹⁹F and ¹³C NMR, spectroscopy. Similar reactions of CF₃CCCF₃ and CF₃CFCFCF₃ with the cyclopentadiene derivatives Me₃MC₅H₅ and (Me₃M)₂C₅H₄ (M = Si, Sn) are also described.