How deeply are core electrons perturbed when valence electrons are spin polarized? The case study of transition metal compounds

The ferromagnetic and antiferromagnetic wave functions of the KMnF₃ perovskite have been evaluated quantum-mechanically by using an all electron approach and, for comparison, pseudopotentials on the transition metal and the fluorine ions. It is shown that the different number of α and β electrons in the d shell of Mn perturbs the inner shells, with shifts between the α and β eigenvalues that can be as large as 6 eV for the 3s level, and is far from negligible also for the 2s and 2p states. The valence electrons of F are polarized by the majority spin electrons of Mn, and in turn, spin polarize their 1s electrons. When a pseudopotential is used, such a spin polarization of the core functions of Mn and F can obviously not take place. The importance of such a spin polarization can be appreciated by comparing (i) the spin density at the Mn and F nuclear position, and then the Fermi contact constant, a crucial quantity for the hyperfine coupling, and (ii) the ferromagnetic–antiferromagnetic energy difference, when obtained with an all electron or a pseudopotential scheme, and exploring how the latter varies with pressure. This difference is as large as 50% of the all electron datum, and is mainly due to the rigid treatment of the F ion core. The effect of five different functionals on the core spin polarization is documented.     

COAST: Controllable approximative stochastic reaction algorithm

We present an approximative algorithm for stochastic simulations of chemical reaction systems, called COAST, based on three different modeling levels: for small numbers of particles an exact stochastic model; for intermediate numbers an approximative, but computationally more efficient stochastic model based on discrete Gaussian distributions; and for large numbers the deterministic reaction kinetics. In every simulation time step, the subdivision of the reaction channels into the three different modeling levels is done automatically, where all approximations applied can be controlled by a single error parameter for which an appropriate value can easily be found. Test simulations show that the results of COAST simulations agree well with the outcomes of exact algorithms; however, the asymptotic run times of COAST are asymptotically proportional to smaller powers of the particle numbers than exact algorithms.     

The lipidated membrane anchor of full length N-Ras protein shows an extensive dynamics as revealed by solid-state NMR spectroscopy

Many proteins involved in signal transduction are equipped with covalently attached lipid chains providing a hydrophobic anchor targeting these molecules to membranes. Despite the considerable biological significance of this membrane binding mechanism for 5-10% of all cellular proteins, to date very little is known about structural and dynamical features of lipidated membrane binding domains. Here we report the first comprehensive study of the molecular dynamics of the C-terminus of membrane-associated full-length lipidated Ras protein determined by solid-state NMR. Fully functional lipid-modified N-Ras protein was obtained by chemical-biological synthesis ligating the expressed water soluble N-terminus with a chemically synthesized (2)H or (13)C labeled lipidated heptapeptide. Dynamical parameters for the lipid chain modification at Cys 181 were determined from static (2)H NMR order parameter and relaxation measurements. Order parameters describing the amplitude of motion in the protein backbone and the side chain were determined from site-specific measurements of (1)H-(13)C dipolar couplings for all seven amino acids in the membrane anchor of Ras. Finally, the correlation times of motion were determined from temperature dependent relaxation time measurements and analyzed using a modified Lipari Szabo approach. Overall, the C-terminus of Ras shows a versatile dynamics with segmental fluctuations and axially symmetric overall motions on the membrane surface. In particular, the lipid chain modifications are highly flexible in the membrane.     

Homoleptic coordination of arsenine C5H5As to molybdenum(0) and tungsten(0): further observations on the eta1,eta6-dilemma

By means of metal-atom ligand-vapor cocondensation (CC) hexa(eta1-arsenine)molybdenum (11) and hexa(eta1-arsenine)tungsten (12) have been prepared; in the molybdenum case, the sandwich complex bis(eta6-arsenine)molybdenum (10) has been isolated as the primary product. The structure of 12 follows from a single-crystal X-ray diffraction study. Based on the results of CC synthesis, chromium binds to arsenine in the eta6-mode exclusively, molybdenum features both options eta1 and eta6, and for tungsten only eta1 coordination is observed.     

Water-soluble perylene diimides: Solution photophysics and layer-by-layer incorporation into polyelectrolyte films

Recently the synthesis of water-soluble and fluorescent perylene diimides has been reported (Müllen, K.; et al. Angew. Chem., Int. Ed. 2004, 43, 1528; Chem.-Eur. J. 2004, 10, 5297). We have characterized the photophysics of two of these compounds (anionic n-PDI, CAS Reg. No. 694438-88-5. and cationic p-PDI, CAS Reg. No. 817207-4-7) in pure water, dimethyl sulfoxide (DMSO), and aqueous NaCl. These studies, supported by molecular dynamics simulations, have led to the conclusion that these compounds form weakly interacting aggregated species in pure water. n-PDI and p-PDI have been incorporated in polyelectrolyte films of poly(styrene sulfonate) (PSS) and poly(diallyldimethylammonium chloride) (PDAC) following the layer-by-layer (LBL) methodology. The optical density and fluorescence intensity of the PDI-LBL films grew linearly with the number of layers, and the PDI was not extracted by subsequent polyelectrolyte deposition. The PDI fluorescence quantum yield was substantially diminished in these films, which we interpret as a self-quenching effect, enhanced by inter- and intralayer energy transfer. Energy-transfer studies to the incorporated cationic dye Brilliant Green (BG) has demonstrated that the BG resides in the same PSS-rich region as p-PDI and is largely excluded from the region that contains n-PDI (PDAC-rich).     

Reinforced self-assembly of hexa-peri-hexabenzocoronenes by hydrogen bonds: from microscopic aggregates to macroscopic fluorescent organogels

Hexa-peri-hexabenzocoronene derivatives (HBCs) that have hydrogen-bonding functionalities (either amido or ureido groups) adjacent to the aromatic cores have been synthesized to study the effects of intracolumnar hydrogen bonds on the self-assembly behavior of HBCs. The hydrogen bonds effectively increased the aggregation tendency of these compounds in solution. In the bulk state, the typical columnar supramolecular arrangement of HBCs was either stabilized substantially (1 a, 1 b, 2 a, and 2 b), or suppressed by dominant hydrogen-bonding interactions (3). For some of the compounds (1 a, 2 a, and 2 b), the supramolecular arrangement adopted in the liquid-crystalline state was even retained after annealing, presumably owing to the reinforcement of the pi-stacking interactions by the hydrogen bonds. Additionally, the combined effect of the hydrogen bonds and pi-stacking of the aromatic moieties led to the formation of fluorescent organogels, whereby some derivatives were further investigated as novel low molecular-mass organic gelators (LMOGs).     

Dihydroxyacetone variants in the organocatalytic construction of carbohydrates: mimicking tagatose and fuculose aldolases

Dihydroxyacetone variants have been explored as donors in organocatalytic aldol reactions with various aldehyde and ketone acceptors. The protected form of dihydroxyacetone that was chosen for in-depth study was 2,2-dimethyl-1,3-dioxan-5-one, 1. Among the catalysts surveyed here, proline proved to be superior in terms of yield and stereoselectivities in the construction of various carbohydrate scaffolds. In a fashion analogous to aldolase enzymes, the de novo preparation of L-ribulose, L-lyxose, D-ribose, D-tagatose, 1-amino-1-deoxy-D-lyxitol, and other carbohydrates was accomplished via the use of 1 and proline. In reactions using 2,2-dimethyl-1,3-dioxan-5-one 1 as a donor, (S)-proline can be used as a functional mimic of tagatose aldolase, whereas (R)-proline can be regarded as an organocatalytic mimic of fuculose aldolase.     

Study on structural properties and solution dynamics of zinc complexes with the (N,N-dimethylaminomethyl)ferrocenyl ligand

The reaction of {C,N-[Fe(η⁵-C₅H₅)(η⁵-C₅H₃(CH₂NMe₂)-2)]}Li, (FcN)Li, with zinc chloride affords the diorganozinc complex (FcN)₂Zn (1). In solution, 1 appears as a mixture of rac and meso diastereomers, whereas in the solid state it crystallizes solely as a rac diastereomer. The ratio of rac/meso diastereomers in solution is solvent-, temperature- and concentration-dependent, consistent with an intermolecular exchange between diastereomers. An intramolecular dynamic phenomenon involving dissociation and recoordination of Zn---N bonds was also observed. The reaction of 1 with zinc chloride yields the monoorganozinc compound (FcN)ZnCl (2) as a slightly soluble yellow microcrystalline powder.     

Multichromophoric polyphenylene dendrimers: toward brilliant light emitters with an increased number of fluorophores

Two routes for the introduction of highly fluorescent peryleneimide chromophores into the scaffolding of polyphenylene dendrimers via iterative Diels-Alder cycloadditions are presented. The key intermediates for the divergent dendrimer buildup were two cyclopentadienone branching units carrying two peryleneimides and two masked terminal alkynes. The difference between the two reagents is the mode of incorporation of the chromophores. In the first case, the chromophores were attached to the alpha-position of the tetraphenylcyclopentadienones. In the second case, peryleneimides are used as a "spacer" in the beta-position of the cyclopentadienones giving rise to dendrimers with extended molecular diameters (up to 12 nm) and 24 chromophores within their scaffold. Absorption and emission characteristics of the new multichromophoric nanoparticles were investigated and compared to those of the parent dyes. Additionally, an asymmetrically substituted first-generation dendrimer with six perylene diimide chromophores and one ester functionality is reported. The ester serves as a potential anchor group, and this nanoemitter paves the way to a multichromophoric fluorescence label. All dendrimers have good solubility in common organic solvents, high fluorescence quantum yields, and defined distances between the chromophores, making them attractive candidates for single-molecule spectroscopy.     

The coordinative properties of the ligands Ph2ECH2EPh2 (E = P,As, Sb) in carbonylvanadium complexes,and the molecular structure of η5-C5H5V(CO)3As2Ph4

Photo-reaction between the ligands Ph₂ECH₂EPh₂ (E = P: dppm, E = As: dpam, E = Sb: dpsm), L, and the vanadium complexes η⁵-C₅H₅V(CO)₄ and [Et₄N][V(CO)₆] yields monosubstituted mononuclear (dpsm) and dinuclear, ligand-bridged complexes (dpam, dpsm). With dppm, the final products are disubstituted chelate complexes, but monosubstituted mono- and dinuclear species are formed as intermediates.The shielding of the ⁵¹V nucleus decreases in the series dpsm > dppm > dpam and {M(CO)_n} > {M(CO)_n?1} L > {M(CO)_n?1}₂μ-L > {M(CO)_n?2}dppm ({M(CO)_n}[V(CO)₆]^?, η⁵-C₅H₅V(CO)₄). The half-widths of the NMR signals are greater for dinuclear than for mononuclear complexes.The crystal and molecular structures of η⁵-C₅H₅V(CO)₃As₂Ph₄ have been determined. The compound crystallizes in the space group P2₁/c with a = 1347.8, b = 1020.0, c = 2085.2 pm and β = 82.3°. Due to steric crowding, the ⁵¹V shielding is low composed to that of {η⁵-C₅H₅V(CO)₃}₂μ-dpam.