Mechanisms and Beyond: Elucidation of Fluxional Dynamics by Exchange NMR Spectroscopy

Detailed mechanistic information is crucial to our understanding of reaction pathways and selectivity. Dynamic exchange NMR techniques, in particular 2D exchange spectroscopy (EXSY) and its modifications, provide indispensable intricate information on the mechanisms of organic and inorganic reactions and other phenomena, for example, the dynamics of interfacial processes. In this Review, key results from exchange NMR studies of small molecules over the last few decades are systemised and discussed. After a brief introduction to the theory, the key types of dynamic processes are identified and fundamental examples given of intra- and intermolecular reactions, which, in turn, could involve, or not, bond-making and bond-breaking events. Following that logic, internal molecular rotation, intramolecular stereomutation and molecular recognition will first be considered because they do not typically involve bond breaking. Then, rearrangements, substitution-type reactions, cyclisations, additions and other processes affecting chemical bonds will be discussed. Finally, interfacial molecular dynamics and unexpected combinations of different types of fluxional processes will also be highlighted. How exchange NMR spectroscopy helps to identify conformational changes, coordination and molecular recognition processes as well as quantify reaction energy barriers and extract detailed mechanistic information by using reaction rate theory in conjunction with computational techniques will be shown.     

Transamination of 2-piperidinochromanes with (het)arylamines as a convenient route to 2-(het)arylaminochromanes

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Hybrides of Alkaloid Lappaconitine with Pyrimidine Motif on the Anthranilic Acid Moiety: Design,Synthesis, and Investigation of Antinociceptive Potency

Convenient and efficient routes to construct hybrid molecules containing diterpene alkaloid lappaconitine and pyrimidine fragments are reported. One route takes place via first converting of lappaconitine to 1-ethynyl-lappaconitine, followed by the Sonogashira cross-coupling-cyclocondensation sequences. The other involves the palladium-catalyzed carbonylative Sonogashira reaction of 5′-iodolappaconitine with aryl acetylene and Mo (CO)₆ as the CO source in acetonitrile and subsequent cyclocondensation reaction of the generated alkynone with amidines. The reaction proceeded cleanly in the presence of the PdCl₂-(1-Ad)₂PBn∙HBr catalytic system. The protocol provides mild reaction conditions, high yields, and high atom and step-economy. Pharmacological screening of lappaconitine-pyrimidine hybrids for antinociceptive activity in vivo revealed that these compounds possessed high activity in experimental pain models, which was dependent on the nature of the substituent in the 2 and 6 positions of the pyrimidine nucleus. Docking studies were undertaken to gain insight into the possible binding mode of these compounds with the voltage-gated sodium channel 1.7. The moderate toxicity of the leading compound 12 (50% lethal dose (LD₅₀) value was more than 600 mg/kg in vivo) and cytotoxicity to cancer cell lines in vitro encouraged the further design of therapeutically relevant analogues based on this novel type of lappaconitine–pyrimidine hybrids.     

Fundamental Aspects of Xanthene Dye Aggregation on the Surfaces of Nanocluster Polyoxometalates: H- to J-Aggregate Switching

The induced aggregation of the xanthene dye rhodamine B (RhB) on metal oxide centers belonging to the highly symmetric surfaces of precise nanoscale templates with Keplerate (Mo₁₃₂) or toroidal (Mo₁₃₈) structures has been studied. With the joint use of the Langmuir isotherm and full Stern–Volmer models, the thermodynamic reasons for dye adsorption on the nanocluster surface, such as a mixture of monomer, H-aggregate (H-dimer), and J-aggregate forms (which can coexist or switch one into another under the exact conditions), were established: this was shown through UV/Vis and fluorescence spectroscopies. By using the framework of the exciton model, it is shown that the angle (α) between the transition dipole moments of RhB is very sensitive to surface strain inside the dye sub-monolayer. As a result, it is possible to switch from H- to J-aggregates by the post-functionalization of polyoxometalate (POM)-RhB associates by the surfactant bilayer shell, which allows the surface strain to grow. Recommendations are provided for managing the appearance of H- or J-aggregates on metal oxide (or polyelectrolyte) surfaces during photovoltaic or bioimaging applications.     

Hyperpolarizing Concentrated Metronidazole 15NO2 Group over Six Chemical Bonds with More than 15 % Polarization and a 20 Minute Lifetime

The NMR hyperpolarization of uniformly ¹⁵N-labeled [¹⁵N₃]metronidazole is demonstrated by using SABRE-SHEATH. In this antibiotic, the ¹⁵NO₂ group is hyperpolarized through spin relays created by ¹⁵N spins in [¹⁵N₃]metronidazole, and the polarization is transferred from parahydrogen-derived hydrides over six chemical bonds. In less than a minute of parahydrogen bubbling at approximately 0.4 μT, a high level of nuclear spin polarization (P_15N) of around 16 % is achieved on all three ¹⁵N sites. This product of ¹⁵N polarization and concentration of ¹⁵N spins is around six-fold better than any previous value determined for ¹⁵N SABRE-derived hyperpolarization. At 1.4 T, the hyperpolarized state persists for tens of minutes (relaxation time, T₁≈10 min). A novel synthesis of uniformly ¹⁵N-enriched metronidazole is reported with a yield of 15 %. This approach can potentially be used for synthesis of a wide variety of in vivo metabolic probes with potential uses ranging from hypoxia sensing to theranostic imaging.     

Structure and dynamic features of an intramolecular frustrated Lewis pair

Di(mesityl)cyclohexenylphosphine undergoes hydroboration with Piers' borane [HB(C₆F₅)₂] to yield the cyclohexylene‐anellated frustrated Lewis pair 5 . This P/B pair splits H₂ with the formation of the product 4 and adds to the C?O double bond of phenyl isocyanate to yield 6 . In the crystal, compound 5 features a puckered four‐membered heterocyclic core structure with a long P? B bond (av. 2.197(5) Å). The activation energy of the P? B cleavage of the frustrated Lewis pair 5 was determined by dynamic ¹⁹F NMR spectroscopy at ΔG^≠(298 K)=12.1±0.3 kcal mol^?1.     

Nocardiopsins: New FKBP12‐Binding Macrolide Polyketides from an Australian Marine‐Derived Actinomycete,Nocardiopsis sp.

A marine‐derived actinomycete, Nocardiopsis sp. (CMB‐M0232), obtained from a sediment sample collected at a depth of 55 m off the coast of Brisbane, Australia, yielded two new macrolide polyketides. Structures for nocardiopsins A and B were assigned by detailed spectroscopic analysis, degradation and chemical derivatization. A Marfey’s analysis revealed an unexpected acid‐mediated partial racemization of the L ‐pipecolic acid incorporated within the nocardiopsins. The scope of this racemization was assessed against a selection of natural and synthetic N‐acyl pipecolic acids. While the nocardiopsins are not antibacterial, antifungal or cytotoxic, they do exhibit low‐micromolar binding to the immunophilin FKBP12, consistent with their structural and biosynthetic relationship to the immunosuppressive agents FK506 and rapamycin. The nocardiopsins represent a new point of entry into what has been a valuable, exclusive and reclusive region of bioactive chemical space—that surrounding the FK506/rapamycin pharmacophore.