Adsorption Kinetics of Complexes Formed by Oppositely Charged Polyelectrolytes

The objective of this study is to gain an understanding of the kinetics of adsorption of complexes formed in aqueous solution by oppositely charged polyelectrolytes. The properties of the complexes were characterized by means of dynamic light scattering and electrophoretic mobility and the reaction stoichiometry was studied by titration. The stoichiometry in the complexes depends on the polymer weight ratio w(p). Their point of zero charge (pzc) is shifted toward lower w(p) when simple cations of higher valence are added to the solution. The adsorption kinetics of the complexes on silica was studied by stagnation point reflectometry. The sign of charge of the complexes as well as the valence and concentration of simple cations governs the occurrence of adsorption in the electrolytes studied. Five different types of adsorption kinetics were found. Copyright 2001 Academic Press.     

Decay of cystalline order and equilibration during the solid-to-plasma transition induced by 20-fs microfocused 92-eV free-electron-laser pulses

We have studied a solid-to-plasma transition by irradiating Al foils with the FLASH free electron laser at intensities up to 10(16) W/cm(2). Intense XUV self-emission shows spectral features that are consistent with emission from regions of high density, which go beyond single inner-shell photoionization of solids. Characteristic features of intrashell transitions allowed us to identify Auger heating of the electrons in the conduction band occurring immediately after the absorption of the XUV laser energy as the dominant mechanism. A simple model of a multicharge state inverse Auger effect is proposed to explain the target emission when the conduction band at solid density becomes more atomiclike as energy is transferred from the electrons to the ions. This allows one to determine, independent of plasma simulations, the electron temperature and density just after the decay of crystalline order and to characterize the early time evolution.     

FiD: a software for ab initio structural identification of product ions from tandem mass spectrometric data

We present FiD (Fragment iDentificator), a software tool for the structural identification of product ions produced with tandem mass spectrometric measurement of low molecular weight organic compounds. Tandem mass spectrometry (MS/MS) has proven to be an indispensable tool in modern, cell-wide metabolomics and fluxomics studies. In such studies, the structural information of the MS(n) product ions is usually needed in the downstream analysis of the measurement data. The manual identification of the structures of MS(n) product ions is, however, a nontrivial task requiring expertise, and calls for computer assistance. Commercial software tools, such as Mass Frontier and ACD/MS Fragmenter, rely on fragmentation rule databases for the identification of MS(n) product ions. FiD, on the other hand, conducts a combinatorial search over all possible fragmentation paths and outputs a ranked list of alternative structures. This gives the user an advantage in situations where the MS/MS data of compounds with less well-known fragmentation mechanisms are processed. FiD software implements two fragmentation models, the single-step model that ignores intermediate fragmentation states and the multi-step model, which allows for complex fragmentation pathways. The software works for MS/MS data produced both in positive- and negative-ion modes. The software has an easy-to-use graphical interface with built-in visualization capabilities for structures of product ions and fragmentation pathways. In our experiments involving amino acids and sugar-phosphates, often found, e.g., in the central carbon metabolism of yeasts, FiD software correctly predicted the structures of product ions on average in 85% of the cases. The FiD software is free for academic use and is available for download from www.cs.helsinki.fi/group/sysfys/software/fragid. Copyright (c) 2008 John Wiley & Sons, Ltd.     

Adsorption of complexes formed by cationic starch and anionic surfactants on quartz studied by QCM-D

The adsorption of complexes of cationic starch, (CS) and a series of homologous sodium alkanoates on silica was studied with the quartz crystal microbalance with dissipation (QCM-D) instrument. The systems were chosen so as to represent CS/surfactant ratios below and above the critical association concentrations of the surfactants but below their critical micelle concentrations. It was found that

– surfactants did not adsorb on cationic polymers that were very tightly bound to the surface;

– surfactants did adsorb on polyelectrolytes forming layers with loops and tails extending into the solution, provided the concentration of surfactant was at least around the critical association concentration (cac) of the surfactant/polymer system;

– adsorption of surfactant was promoted by increasing the surfactant chain length and by adding simple electrolyte that weakened the electrostatic polymer/surface interaction and

– multilayers were formed when the surfactant concentration in solution was well above the cac; their formation was promoted by increasing hydrophobic interactions, e.g. by increasing the surfactant chain length.

Quantum chemical simulation of excited states of chlorophylls, bacteriochlorophylls and their complexes

The present review describes the use of quantum chemical methods in estimation of structures and electronic transition energies of photosynthetic pigments in vacuum, in solution and imbedded in proteins. Monomeric Mg-porphyrins, chlorophylls and bacteriochlorophylls and their solvent 1:1 and 1:2 complexes were studied. Calculations were performed for Mg-porphyrin, Mg-chlorin, Mg-bacteriochlorin, mesochlorophyll a, chlorophylls a, b, c(1), c(2), c(3), d and bacteriochlorophylls a, b, c, d, e, f, g, h, plus several homologues. Geometries were optimised with PM3, PM3/CISD, PM5, ab initio HF (6-31G*/6-311G**) and density functional B3LYP (6-31G*/6-311G**) methods. Spectroscopic transition energies were calculated with ZINDO/S CIS, PM3 CIS, PM3 CISD, ab initio CIS, time-dependent HF and time-dependent B3LYP methods. Estimates for experimental transition energies were obtained from linear correlations of the calculated transition energies of 1:1 solvent complexes against experimentally recorded solution energies (scaling). According to the calculations in five-coordinated solvent complexes the magnesium atom lies out of the porphyrin plane, while in six-coordinated complexes the porphyrin is nearly planar. Charge densities on magnesium and nitrogen atoms were strongly dependent on the computational method deployed. Several dark states of low oscillator strength below the main Soret band were predicted for solvent complexes and chlorophylls and bacteriochlorophylls in protein environment. Such states, though not yet identified experimentally, might serve as intermediate states for excitation energy transfer in photosynthetic complexes. Q(y), Q(x) and Soret transition energies were found to depend on the orientation of the acetyl group and external pressure. A method to estimate site energies and dimeric interaction energies and to simulate absorption and CD spectra of photosynthetic complexes is described. Simulations for the light harvesting complexes Rhodospirillum molischianum, chlorosomes of Chlorobium tepidum and Chloroflexus aurantiacus, and LHC-II of Spinacia oleracea are presented as examples.     

Influence of ligand structure on the stability and oxidation of copper nanoparticles

The stability and oxidation of copper nanoparticles stabilized with various ligands have been studied. Lauric acid-capped copper nanoparticles were prepared by a modified Brust-Schiffrin method. Then, ligand exchange with an excess of different capping agents was performed. Oxidation and stability were studied by UV-vis, XRD, and TEM. Alkanethiols and oleic acid were found to improve air stability. The oxidation resistance of thiol-capped copper nanoparticles was found to increase with the chain length of the thiol. However, excess thiol caused etching of the particles under nitrogen. With oleic acid no etching was observed under nitrogen. After oxidation, no traces of the ligand-exchanged particles were found, suggesting their dissolution due to excess ligand. Oleic acid protected the particles against oxidation better than the tested thiols at large excess (ligand-copper ratio 20:1).     

Green functions in stochastic field theory

Functional representations are reviewed for the generating function of Green functions of stochastic problems stated either with the use of the Fokker-Planck equation or the master equation. Both cases are treated in a unified manner based on the operator approach similar to quantum mechanics. Solution of a second-order stochastic differential equation in the framework of stochastic field theory is constructed. Ambiguities in the mathematical formulation of stochastic field theory are discussed. The Schwinger-Keldysh representation is constructed for the Green functions of the stochastic field theory which yields a functional-integral representation with local action but without the explicit functional Jacobi determinant or ghost fields.     

Estimating a linear functional relationship under linear constraints for errors

Maximum likelihood estimates for parameters in a linear functional relationship are derived when the errors are also linearly related for each observation. This is approximately the case, for example, when both variables are smooth functions of time and their values are recorded as an experimental unit reaches a certain state. This kind of model specification was needed to describe how the timing of growth cessation of trees depends on night length and temperature sum. If the slope in the constraint equation for errors varies, then an iterative estimation procedure is needed. The estimation method is extended for a two-phase linear model.     

Pointwise Hardy inequalities and uniformly fat sets

We prove that it is equivalent for domain in to admit the pointwise -Hardy inequality, have uniformly -fat complement, or satisfy a uniform inner boundary density condition.