Upgrade of the nuclear resonant scattering beamline, BL09XU in SPring-8

An Upgrade of the nuclear resonant scattering beamline, BL09XU in SPring-8 has been conducted. A liquid nitrogen cooled high-heat load monochromator was installed and a 2nd experimental hutch was constructed. The instruments installed in the hutch allow for a variety of sample conditions. Newly developed high-resolution monochromators with better stability including the back scattering geometry monochromator have opened up the easy access to more isotopes and more precise measurements.     

Direct Conjugate Addition of Alkynes with α,β‐Unsaturated Carbonyl Compounds Catalyzed by NCN‐Pincer Ru Complexes

NCN‐pincer Ru‐complexes containing bis(oxazolinyl)phenyl ligands serve as suitable catalysts in the direct conjugate additions of α,β‐unsaturated carbonyl compounds, including ketones, esters, and amides, as well as vinylphosphonates, giving various β‐alkynyl carbonyl and phosphonate compounds. A bis(oxazolinyl)phenyl (phebox)–Ru complex also catalyzes the asymmetric conjugate addition of an alkyne with a β‐substituted, α,β‐unsaturated ketone to produce a chiral β‐alkynyl ketone.     

Protonation susceptibility of functional groups: A new parameter for interpreting chemical ionization mass spectra of bifunctional organic compounds

A new parameter, the protonation susceptibility (PS), of functional groups in the chemical ionization mass spectrometry of bifunctional organic compounds is presented. In terms of quasi-equilibrium theory of unimolecular decomposition of the molecular protonated ion of [MH]⁺, the relative PS corresponds to the relative area under P(E) curves of [MH]⁺ ions that have a proton at different functional groups. Numerical evaluation of the PS values of pertinent functional groups was made by using particularly selected compounds. The results clearly indicate that PS is independent of proton affinity (PA).     

Direct monitoring of DNA cleavages catalyzed by an ATP-dependent deoxyribonuclease on a 27 MHz quartz-crystal microbalance

Kinetic studies of enzymatic DNA cleavage reactions (the enzyme binding, hydrolysis along DNA strands, and then release of the enzyme from the completely hydrolyzed ssDNA) were carried out on a 27 MHz quartz-crystal microbalance.     

Collisional granular flow as a micropolar fluid

We show that a micropolar fluid model successfully describes collisional granular flows on a slope. A micropolar fluid is the fluid with internal structures in which coupling between the spin of each particle and the macroscopic velocity field is taken into account. It is a hydrodynamical framework suitable for granular systems which consists of particles with macroscopic size. We demonstrate that the model equations can quantitatively reproduce the velocity and the angular velocity profiles obtained from the numerical simulation of the collisional granular flow on a slope using a simple estimate for the parameters in the theory.     

Unambiguous detection of target DNAs by excimer-monomer switching molecular beacons

A new class of molecular beacons were developed in which pyrene fluorophores were connected both at 3' and 5' ends of a single-stranded oligonucleotide. The two pyrene-based fluorophores were synthesized from the same starting material, so that the preparation of the beacons was simplified. The detection strategy of the beacons for target DNAs is based on "excimer-monomer emission switching" of the pyrene fluorophores: excimer emission of the pyrene moieties changed to monomer one when the beacons hybridized with the targets. This type of two-state mode of fluorescence allows unambiguous detection of the target DNAs because strict 1:1 correlation between the nonhybridized and the hybridized beacons can be monitored by the presence of isoemissive points of the fluorescence changes. The beacons can detect target 19-mer DNAs and can discriminate the targets from their single-nucleotide mismatches at 1 nM concentration. Advantages of the excimer-monomer switching molecular beacons were discussed in comparison with conventional ones.