High‐Loading Supports for Oligonucleotide Synthesis

A simple protocol for the preparation of high‐loading supports, suitable for large‐scale synthesis of oligonucleotides, has been developed. The method involves the use of inexpensive reagents and is amenable to large‐scale preparation of supports. The derivatized supports were successfully employed in an automated DNA synthesizer without any difficulty. The quality of the synthesized oligonucleotides was found to be comparable to that of the corresponding oligomers prepared with commercially available standard supports.     

Grafting of organosilane derived from 3-glycidoxypropyltrimethoxysilane and thiourea onto magnesium phyllosilicate by sol–gel process and investigation of metal adsorption properties

A layered inorganic–organic magnesium silicate (Mg-GTPS-TU) has been successfully synthesized by using sol–gel based precursor under mild temperature conditions and a new silylaing agent (GTPS-TU) derived from 3-glycidoxypropyltrimethoxysilane (GTPS) and thiourea (TU) as the silicon source. The hybrid material was characterized through elemental analysis, infrared spectroscopy, X-ray diffractometry, thermogravimetry, and carbon and silicon solid-state nuclear magnetic resonance spectroscopy. The result confirmed the attachment of organic functionality to the inorganic silicon network. The inter-lamellar distance for the hybrid material was found to be 18.8 Å. Metal adsorption characteristics follows Cr(III) >Mn(II)>Zn(II) with more affinity towards Cr(III) in dilute aqueous solution. Evaluation of thermodynamic parameters ΔH and ΔS for Cr(III) were found to be 25.44 J mol⁻¹ and 79.9 J mol⁻¹ K⁻¹, respectively, indicating adsorption process to be endothermic in nature. The negative value of ΔG indicated the feasibility and spontaneity of ongoing adsorption process at relatively higher temperature. The presence of multiple coordination sites in the attached organic functionality expresses the potentiality of the hybrid material containing new silylating agent for heavy cation removal from eco-system.     

Bilayer vesicles as precursors for spherical fractal aggregates from the self-assembly of a C60-fullerene-dyad in polar solvent

Spherical fractal aggregates of approximately 10 microm were formed from a pi-electronic amphiphile, C(60)-didodecyloxybenzene dyad when extracted from THF into water, necessitating a critical dielectric constant epsilon > or =30 in binary THF-water mixtures. Molecular dynamics simulations revealed the unit cluster to such a form involves an aggregation number approximately 90 with predominant soft associative molecular interactions which corroborated the octadecahedral model proposed for the cluster growth.     

Ligand control on the reactions of oxygen- and sulphur-bonded (sulphito)pentaminecobalt(III) complexes in solution

The kinetics of formation, acid-catalysed aquation, ligand isomerisation (CoIIIOSO2+→CoIIISO3+), intramolecular electron-transfer, and base-catalysed hydrolysis and isomerisation of O-bonded sulphito complexes, cis-[Co(en)2(B)(OSO2–O)]+[B=benzimidazole (bzimH), N-methylimidazole (N-meim)] and the anation of cis-[Co(en)2(B)OH)]2+ [B=bzimH, N-meim and imH (imidazole)] by oxSO2−3 are reported. Steric acceleration is observed in the formation and acid-catalysed aquation of the O-sulphito complexes. The ligand isomerisation leads to loss of the monodentate amine with the formation of trans-[Co(en)2(SO3–S)2]− (in an excess of sulphite). Steric acceleration is more pronounced in the isomerisation and base hydrolysis than in the redox process. The results indicate cis labilisation of the coordinated O-sulphite. The [(tetraethylenepentamine)Co(OSO2–O)]+ cation undergoes base hydrolysis 103 times faster than the corresponding (en)2(B) complexes; base-catalysed ligand isomerisation for the former is not observed unlike in the latter. The anation of cis-[Co(en)2(B)OH]2+ (B=imH, bzimH, N-meim) by SO2−3 in a mild alkali pH range (pH=7.9–9.6) and in an excess of SO2−3, yields exclusively trans-[Co(en)2(SO3–S)2]− with no evidence for the formation of the cis-[Co(en)2(B)(SO3–S)]+ or its O-sulphito analogue. The intramolecularly generated amido conjugate base of the sulphite ion-pair, {cis-[Co(en)2(B)OH]2+,SO32−}.41cm{cis-[Co(en)(en-H) (B)- OH2]2+,SO32−}, is believed to generate a five-coordinate intermediate (TBP) that captures the S-end of SO2−3 selectively from a site trans-to the amine B so that the amine is labilised by the trans effect of the sulphite. The NH-deprotonated coordinated imidazolate or benzimidazolate species, cis-[Co(en)2(bzm/im)OH]+, do not undergo anation by SO2−3. This revised version was published online in June 2006 with corrections to the Cover Date.     

Effects of admixtures of potassium bromide on the thermal decomposition of potassium bromate

The effects of admixtures of potassium bromide (2.5% and 5%) on the thermal decomposition of potassium bromate were studied within the temperature range 653–683 K. The fraction decomposed() vs. time (t) relations revealed (i) initial gas evolution, (ii) acceleratory and (iii) decay steps. The data were analysed on the basis of the first-order law with two rate constantsk ₁ andk ₂,k ₁ being the rate constant for the initial, slow first-order process (0.02, 0.26), andk ₂ being the rate constant for the subsequent faster process, holding within the range 0.21 to 0.98. Upon increase of the concentration of added potassium bromide to 5%, the range for the slow and faster processes became 0.01 to 0.16 and 0.1 to 0.98, respectively. At a given temperature,k ₁ increased with increasing bromide concentration, whereask ₂ almost identical for pure potassium bromate and its mixtures (2.5% and 5% bromide).

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Zusammenfassung Im Temperaturbereich von 653–683 K wurde der Einfluß von Beimengen von Kaliumbromid (2,5% und 5%) auf die thermische Zersetzung von Kaliumbromat untersucht. Die Funktion der zersetzten Menge () in Abhängigkeit von der Zeit (t) weist eine anfängliche Gasentwicklung(i), eine beschleunigte(ii) und eine abklingende Stufe(iii) auf. Die Daten wurden auf der Grundlage einer Kinetik erster Ordnung mit den zwei Geschwindigkeitskonstantenk ₁ undk ₂ durchgeführt, wobeik ₁ die Geschwindigkeitskonstante für den einleitenden, langsameren Schritt erster Ordnung ist (0,02, 0,26) undk ₂ die Geschwindigkeitskonstante für den darauffolgenden schnelleren Vorgang mit Werten zwischen 0,21 und 0,98. Bei Erhöhung der Konzentration von Kaliumbromid auf 5% betrug der Bereich für den langsameren und den schnelleren Vorgang 0,01 bis 0,16 bzw. 0,10 bis 0,98. Bei gegebener Temperatur steigtk ₁ mit zunehmender Kaliumbromidkonzentration an, währendk ₂ für reines Kaliumbromat und seine Mischungen mit 2,5% und 5% Kaliumbromid fast identisch bleibt.

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653–683 (2,5 5%) . , . k ₁ k ₂, ( 0,02 0,26), - 0,21–0,98. 5% k ₁ k ₂ , , 0,01–0,16 0,1–0,98. k ₁, , k ₂ , (2,5 5%) .

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The work is dedicated to the memory of the late Prof. S. R. Mohanty.     

Kinetics of aquation of pentaammine(substituted salicylato)cobalt(III) complexes by ferric ion

Summary The aquation of pentaammine (substituted salicylato) cobalt(III) complexes [(NH₃)₅CoO₂CC₆H₃(X)OH]²⁺,X = 5-SO₃, 5-Br, 5-NO₂, and 3-NO₂ in the presence of ferric ion was studied spectrophotometrically in the 65°–80° range. Ferric ion catalyses the aquation of the substratesvia formation of a reactive binuclear species.Reprints of this article are not available.     

Molecular orbital studies on nucleoside antibiotics X. Conformation of nebularine and isoguanosine

Summary Conformational properties of two nucleoside analogs, namely nebularine and isoguanosine have been investigated by using PCILO (Perturbative Configuration Interaction using Localized Orbitals) method. Nebularine (9--ribofurnosyl purine) is a naturally occurring purine nucleoside which is structurally similar to adenosine and it inhibits the growth of tumor cells and influenza B virus. Isoguanosine is one of the two naturally occurring analogs of guanosine. Both C2-endo and C3-endo sugar puckerings have been considered for both the molecules with preselected values of torsion angles around C2–O2 and C5–O5 bonds. The results indicate that nebularine has conformational preferences very similar to those of its parent nucleoside, adenosine; whereas the conformational properties of isoguanosine are very different from those of guanosine as well as adenosine. The important implications of these results have been discussed in terms of the biological activity of these molecules.     

Copolymerization Behavior of Some Acidic and Basic Monomers

Copolymerization reactivity ratios of the systems 4-vinyl-pyridine (VP)-methacrylic acid (MA), dimethylamino methacrylate (DMAM)-MA, and VP-DMAM were obtained using the Fineman-Ross procedure. The experimental values were found to differ considerably from the values calculated from the Q-e scheme. R₁ and r₂ values calculated using seven different models for the VP-MA system have been compared with the experimental values.     

Numerical simulation of vortex induced vibrations and its control by suction and blowing

The vortex formation and shedding behind bluff structures is influenced by fluid flow parameters such as, Reynolds number, surface roughness, turbulence level, etc. and structural parameters such as, mass ratio, frequency ratio, damping ratio, etc. When a structure is flexibly mounted, the Kármán vortex street formed behind the structure gives rise to vortex induced oscillations. The control of these flow induced vibrations is of paramount practical importance for a wide range of designs. An analysis of flow patterns behind these structures would enable better understanding of wake properties and their control. In the present study, flow past a smooth circular cylinder is numerically simulated by coupling the mass, momentum conservation equations along with a dynamical evolution equation for the structure. An active flow control strategy based on zero net mass injection is designed and implemented to assess its efficacy. A three actuator system in the form of suction and blowing slots are positioned on the cylinder surface. A single blowing slot is located on the leeward side of the cylinder, while two suction slots are positioned at an angle α = 100°. This system is found to effectively annihilate the vortex induced oscillations, when the quantum of actuations is about three times the free stream velocity. The dynamic adaptability of the proposed control strategy and its ability to suppress vortex induced oscillations is verified. The exact quantum of actuation involved in wake control is achieved by integrating a control equation to decide the actuator response in the form of a closed loop feed back system. Simulations are extended to high Reynolds number flows by employing eddy viscosity based turbulence models. The three actuator system is found to effectively suppress vortex induced oscillations.