Synthetic Studies on Sialoglycoconjugates 40: Stereocontrolled Synthesis of Sialyl Lewis X Epitope and Its Ceramide Derivative

Abstract

Stereocontrolled synthesis of sialyl Le^x epitope and its ceramide derivative with regard to the introduction of galactose or β-D-galactosyl ceramide into the terminal N-acetylglucosamine residue of sialyl Le^x determinant is described. Königs-Knorr condensation of 2-(trimethylsilyl)ethyl 2, 4, 6-tri-O-benzyl-β-D-galactopyranoside (4) with 3, 4, 6-tri-O-acetyl-2-deoxy-2-phthalimido-D-glucopyranosyl bromide (5) gave the desired β-glycoside 6, which was converted into 2-(trimethylsilyl)ethyl O-(2-acetamido-4, 6-O-benzylidene-2-deoxy-β-D-glucopyranosyl)-(l→3)-2, 4, 6-tri-O-benzyl-β-D-galactopyranoside (8) via removal of the phthaloyl and O-acetyl groups, followed by N-acetylation and 4, 6-O-benzylidenation. Glycosylation of 8 with methyl 2, 3, 4-tri-O-benzyl-1-thio-β-L-fucopyranoside (9) gave the α-glycoside (10), which was transformed by reductive ring-opening of the benzyliderie acetal into the acceptor (11). Dimethyl(methylthio)sulfonium triflate (DMTST)-promoted coupling of 11 with methyl O-(methyl 5-acetamido-4, 7, 8, 9-tetra-O-acetyl-3, 5-dideoxy-D-glycero-α-D-galacto-2-nonulopyranosylonate)-(2→3)-2, 4, 6-tri-O-benzoyl-l-thio-β-D-galactopyra-noside (12) afforded the desired pentasaccharide (13), which was converted into the α-trichloroacetimidate 16 via reductive removal of the benzyl groups, then O-acetylation, removal of the 2-(trimethyIsilyl)ethyl group and treatment with trichloroacetonitrile. Condensation of 16 with (2S, 3R, 4E)-2-azido-3-O-benzoyl-4-octadecene-l, 3-diol (18) gave the β-glycoside 19, which was transformed into the title compound 21, via reduction of the azido group, coupling with octadecanoic acid, O-deacylation and hydrolysis of the methyl ester group. On the other hand, O-deacylation of 13 and subsequent hydrolysis of the methyl ester group gave the pentasaccharide epitope 17.     

Synthetic Studies on Sialoglycoconjugates 12: Total Synthesis of Sialyl Neolactotetraosyl Ceramide

Abstract

Sialoglycoconjugates such as glycoproteins and glycolipids are present as components of cell memberanes and play important roles^1,2 in biological systems. Sialyl neolactotetrasyl ceramide (IV³NeuAcnLc₄Cer), a complex type of ganglioside, was isolated as the major ganglioside of human erythrocytes³ and was shown to be a receptor of that this glycolipid induces granulocytic differentiation of human premyelocytic leukemia cell.     

High-resolution electron microscopy of microstructure of MnF2 subjected to shock compression at 4.4 GPa

Microstructure of MnF₂ subjected to by shock compression at 4.4 GPa was examined using transmission electron microscopy (TEM). Lamellar structure consisting of twin-related domains of rutile-structure and intergrowth of α- PbO₂-type phase is observed in the electron diffraction pattern and TEM images. The crystallographic relationship between rutile and α- PbO₂-type phases can be expressed as and .     

The Sixth Painlevé Equation as Similarity Reduction of $${\widehat{\mathfrak{gl}}_3}$$ Generalized Drinfel’d–Sokolov Hierarchy

Scaling symmetry of -type Drinfel’d–Sokolov hierarchy is investigated. Applying similarity reduction to the hierarchy, one can obtain the Schlesinger equation with (n + 1) regular singularities. Especially in the case of n = 3, the hierarchy contains the three-wave resonant system and the similarity reduction gives the generic case of the Painlevé VI equation. We also discuss Weyl group symmetry of the hierarchy.      

Selective Generation of Formamides through Photocatalytic CO2 Reduction Catalyzed by Ruthenium Carbonyl Compounds

The selective formation of dialkyl formamides through photochemical CO₂ reduction was developed as a means of utilizing CO₂ as a C₁ building block. Photochemical CO₂ reduction catalyzed by a [Ru(bpy)₂(CO)₂]²⁺ (bpy: 2,2′‐bipyridyl)/[Ru(bpy)₃]²⁺/Me₂NH/Me₂NH₂⁺ system in CH₃CN selectively produced dimethylformamide. In this process a ruthenium carbamoyl complex ([Ru(bpy)₂(CO)(CONMe₂)]⁺) formed by the nucleophilic attack of Me₂NH on [Ru(bpy)₂(CO)₂]²⁺ worked as the precursor to DMF. Thus Me₂NH acted as both the sacrificial electron donor and the substrate, while Me₂NH₂⁺ functioned as the proton source. Similar photochemical CO₂ reductions using R₂NH and R₂NH₂⁺ (R=Et, nPr, or nBu) also afforded the corresponding dialkyl formamides (R₂NCHO) together with HCOOH as a by‐product. The main product from the CO₂ reduction transitioned from R₂NCHO to HCOOH with increases in the alkyl chain length of the R₂NH. The selectivity between R₂NCHO and HCOOH was found to depend on the rate of [Ru(bpy)₂(CO)(CONR₂)]⁺ formation.     

Exploiting the Potential of Meroterpenoid Cyclases to Expand the Chemical Space of Fungal Meroterpenoids

Fungal meroterpenoids are a diverse group of hybrid natural products with impressive structural complexity and high potential as drug candidates. In this work, we evaluate the promiscuity of the early structure diversity-generating step in fungal meroterpenoid biosynthetic pathways: the multibond-forming polyene cyclizations catalyzed by the yet poorly understood family of fungal meroterpenoid cyclases. In total, 12 unnatural meroterpenoids were accessed chemoenzymatically using synthetic substrates. Their complex structures were determined by 2D NMR studies as well as crystalline-sponge-based X-ray diffraction analyses. The results obtained revealed a high degree of enzyme promiscuity and experimental results which together with quantum chemical calculations provided a deeper insight into the catalytic activity of this new family of non-canonical, terpene cyclases. The knowledge obtained paves the way to design and engineer artificial pathways towards second generation meroterpenoids with valuable bioactivities based on combinatorial biosynthetic strategies.     

A new method for estimating the relative binding free energy,derived from a free energy variational principle for the Pim-1-kinase–ligand and FKBP–ligand systems

Journal of Computer-Aided Molecular Design - In this study, a new method is proposed for calculating the relative binding free energy between a ligand and a protein, derived from a free energy...     

An “OFF–ON–OFF” fluorescence protein-labeling probe for real-time visualization of the degradation of short-lived proteins in cellular systems

The ability to monitor proteolytic pathways that remove unwanted and damaged proteins from cells is essential for understanding the multiple processes used to maintain cellular homeostasis. In this study, we have developed a new protein-labeling probe that employs an ‘OFF–ON–OFF’ fluorescence switch to enable real-time imaging of the expression (fluorescence ON) and degradation (fluorescence OFF) of PYP-tagged protein constructs in living cells. Fluorescence switching is modulated by intramolecular contact quenching interactions in the unbound probe (fluorescence OFF) being disrupted upon binding to the PYP-tag protein, which turns fluorescence ON. Quenching is then restored when the PYP-tag–probe complex undergoes proteolytic degradation, which results in fluorescence being turned OFF. Optimization of probe structures and PYP-tag mutants has enabled this fast reacting ‘OFF–ON–OFF’ probe to be used to fluorescently image the expression and degradation of short-lived proteins.

An “OFF–ON–OFF” fluorescence probe for real-time imaging of the expression (fluorescence ‘OFF’) and degradation (fluorescence ‘ON’) of short lived PYP-tag proteins in cellular systems.     

Rearrangement of 6,7-dithiabicyclo[3.1.1]heptane 6-oxides to a 7,8-dithia-6-oxabicyclo[3.2.1]octane catalyzed by montmorillonite K 10

Treatment of 2,2,4,4-tetramethyl-1,5-diphenyl-6,7-dithiabicyclo[3.1.1]heptane 6-endo-oxide ( 2 ) with Montmorillonitc K 10 in dichloromethane gave 2,2,-4,4-tetramethyl-1,5-diphenyl-7,8-dithia-6-oxabicyclo-[3.2.1]octane ( 6 ) (11%) with recovery of 2 (87%). Under similar reaction conditions, the 6-exo-oxide 7 and the sulfenate 6 gave a mixture of 6 (21%), 2 (67%), and 7 (9%) and a mixture of 2 (89%) and 6 (9%), respectively. These results indicate the relative thermodynamic stabilities of the three compounds to be 2 > 6 > 7 . PM3 calculations on these compounds showed the heats of formation (kcal/mol) to be in the following order: 6 (44.12783), 2 (57.46721), and 7 (59.37918). The driving force of this unusual 1,2-rearrangement of 2 and 7 to 6 would be the release of the ring strain of the bicyclo[3.1.1]heptane system of 2 and 7 by ring expansion.