Using a cognitive architecture with a physiological substrate to represent effects of a psychological stressor on cognition

Adding a physiological representation to a cognitive architecture offers an attractive approach to modeling the effects of stress on cognition. We introduce ACT-R/Φ, an extended version of the ACT-R cognitive architecture that includes an integrative model of physiology. The extension allows the representation of how physiology and cognition interact. This substrate was used to represent potential effects of a startle response and task-based stress during a mental arithmetic (subtraction) task. We compare predictions from two models loaded into the new hybrid architecture to models previously developed within ACT-R. General behavior differed between models in that the ACT-R/Φ models had dynamic declarative memory noise over the course of the task based on varying epinephrine levels. They attempted more subtractions but were less accurate; this more closely matched human performance than the previous ACT-R models. Using ACT-R/Φ allows a more tractable integration of current physiological and cognitive perspectives on stress. ACT-R/Φ also permits further exploration of the interaction between cognition and physiology, and the emergent effects on behavior caused by the interaction among physiological subsystems. This extension is useful for anyone exploring how the human mind can occur in and be influenced by the physical universe.     

Synthesis of unnatural 3′-phospha-2′-deoxyfuranose nucleoside analogues

This Letter describes the synthesis of racemic analogues of unnatural 2′-deoxy nucleoside with a phosphorus atom replacing the carbon atom in the 3′-position. A seven-step sequence was developed in racemic series to afford unnatural 3′-phospha-2′-deoxyfuranose nucleosides. The phospha nucleoside analogues were tested against HCV, but did not show any antiviral activity at a 10 μM maximum concentration used for the inhibition assays of analogues 2-T, 2-C and 4-Tα.     

Kinetics of radical‐molecule reactions in aqueous solution: A benchmark study of the performance of density functional methods

The performance of 18 density functional approximations has been tested for a very challenging task, the calculations of rate constants for radical‐molecule reactions in aqueous solution. Despite of the many difficulties involved in such an enterprise, six of them provide high quality results, and are recommended to that purpose. They are LC‐ωPBE, M06‐2X, BMK, B2PLYP, M05‐2X, and MN12SX, in that order. This trend was obtained using experimental data as reference. The other relevant aspects used in this benchmark are: (i) the SMD model for mimicking the solvent; (ii) the conventional transition state, the zero‐curvature tunneling correction, and the limit imposed by diffusion for the calculation of the rate constants. Even though changing any of these aspects might alter the trend in performance, at least, when using them, the aforementioned functionals can be successfully used to obtain high quality kinetic data for the kind of reactions investigated in this work. © 2014 Wiley Periodicals, Inc.     

Development of an adapted version of polar organic chemical integrative samplers (POCIS-Nylon)

POCIS (polar organic chemical integrative samplers) are increasingly used for sampling polar compounds. Although very efficient for a wide range of pollutants, the classic configuration of the device has a number of limitations, in particular for the sampling of highly polar analytes and hydrophobic compounds. This study presents a new version of the POCIS passive sampler which uses a highly porous Nylon membrane of 30 μm pore size, enabling the sampling of hydrophobic pollutants and improving the accumulation rate of other pollutants. This newly designed tool and the classic POCIS were both tested during a laboratory experiment to evaluate the accumulation kinetics of a selection of pesticides and pharmaceuticals. The observed results show unexpected accumulation kinetics for the new version of POCIS. To explain the data, the use of an intraparticulate diffusion model was required, which also enabled us to propose another explanation of the burst effect observed with the classic POCIS, primarily related to the potential wetting of the device as the first step in the accumulation of compounds.

Synthesis and antibacterial properties of new phenothiazinyl- and phenyl-nitrones

The synthesis of new phenothiazinyl- and phenyl-nitrones under classical versus microwave heating conditions is described. Better yields were obtained under microwave irradiation in the condensation reactions of phenothiazyl-carbaldehyde with hydroxylamine derivatives. The structures of the new phenothiazinyl-nitrones were assigned on the basis of MS, FT–IR and NMR spectra. The new nitrones and some known phenyl-nitrones were screened for their antibacterial and antifungal activity against several Candida species, Gram negative bacteria, such as E. coli, Citrobacter spp, Morganella spp, Pseudomonas aeruginosa, Klebsiella pneumoniae (± ESBL), Proteus spp, Acinetobacter spp and the Gram positive bacterium Staphylococcus aureus, with moderate results.     

Biomimetic Mussel Adhesive Inspired Anchor to Design ZnO@Poly(3‐Hexylthiophene) Hybrid Core@Corona Nanoparticles

The functionalization of zinc oxide (ZnO) nanoparticles by poly(3‐hexylthiophene) (P3HT) brush is completed by the combination of a mussel inspired biomimetic anchoring group and Huisgen cyclo‐addition “click chemistry.” Herein, the direct coupling of an azide modified catechol derivative with an alkyne end‐functionalized P3HT is described. This macromolecular binding agent is used to access core@corona ZnO@P3HT with a stable and homogeneous conjugated organic corona. Preliminary photoluminescence measurement proves an efficient electron transfer from the donor P3HT to the acceptor ZnO nanoparticles upon grafting, thus demonstrating the potential of such a combination in organic electronics.

     

Mechanics of cell-division: A new continuum model for growth inhomogeneities

The self-reproduction ability of mitotic cells results in an increase of the number of cells with the same characteristics in living bodies. While cells grow in volume and divide themselves, the living body consequently grows in mass and volume. Further, if the factors which regulate the growth process are inhomogeneously distributed, growth takes place at different rates and directions. In this work we aim to provide a new continuum model for growing tissues. More specifically, the model considers the reorientation of the cell-division plane in mitotic cells depending on the stress field of the growing body. (© 2015 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim)     

N-Terminal Selective C−H Azidation of Proline-Containing Peptides: a Platform for Late-Stage Diversification

A methodology for the C−H azidation of N-terminal proline-containing peptides was developed employing only commercially available reagents. Peptides bearing a broad range of functionalities and containing up to 6 amino acids were selectively azidated at the carbamate-protected N-terminal residue in presence of the numerous other functional groups present on the molecules. Post-functionalizations of the obtained aminal compounds were achieved: cycloaddition reactions or C−C bond formations via a sequence of imine formation/nucleophilic addition were performed, offering an easy access to diversified peptides.     

Tuning Deazaflavins Towards Highly Potent Reducing Photocatalysts Guided by Mechanistic Understanding – Enhancement of the Key Step by the Internal Heavy Atom Effect

Deazaflavins are well suited for reductive chemistry acting via a consecutive photo-induced electron transfer, in which their triplet state and semiquinone – the latter is formed from the former after electron transfer from a sacrificial electron donor – are key intermediates. Guided by mechanistic investigations aiming to increase intersystem crossing by the internal heavy atom effect and optimising the concentration conditions to avoid unproductive excited singlet reactions, we synthesised 5-aryldeazaflavins with Br or Cl substituents on different structural positions via a three-component reaction. Bromination of the deazaisoalloxazine core leads to almost 100 % triplet yield but causes photo-instability and enhances unproductive side reactions. Bromine on the 5-phenyl group in ortho position does not affect the photostability, increases the triplet yield, and allows its efficient usage in the photocatalytic dehalogenation of bromo- and chloroarenes with electron-donating methoxy and alkyl groups even under aerobic conditions. Reductive powers comparable to lithium are achieved.