Gene network and canonical pathway analysis in prostate cancer: a microarray study

The molecular mechanism playing a role in the development of prostate cancer (PCA) is not well defined. We decided to determine the changes in gene expression in PCA tissues and to compare them to those in non-cancerous samples. Prostate tissue samples were collected by needle biopsy from 21 PCA and 10 benign prostate hyperplasic (BPH) patients. Total RNA was isolated, cDNA was synthesized, and gene expression levels were determined by microarray method. In the progression to PCA, 738 up-regulated and 515 down-regulated genes were detected in samples. Analysis using Ingenuity Pathway Analysis (IPA) software revealed that 466 network and 423 functions-pathways eligible genes were up-regulated, and 363 network and 342 functions-pathways eligible genes were down-regulated. Up-regulated networks were identified around IL-1beta and insulin-like growth factor-1 (IGF-1) genes. The NFKB gene was centered around two up- and down-regulated networks. Up-regulated canonical pathways were assigned and four of them were evaluated in detail: acute phase response, hepatic fibrosis, actin cytoskeleton, and coagulation pathways. Axonal guidance signaling was the most significant down-regulated canonical pathway. Our data provide not only networks between the genes for understanding the biologic properties of PCA but also useful pathway maps for future understanding of disease and the construction of new therapeutic targets.     

An organocatalytic ionic liquid

The carbene concentration in 1-ethyl-3-methylimidazolium-acetate ionic liquid is sufficiently high to act as a catalyst in benzoin condensation, hydroacylation and also in oxidation of an alcohol by using CO(2) and air. This observation reveals the potential of ionic liquid organocatalysts, uniting the beneficial properties of these two families of compounds.     

Amperometric Response of Alcohols Dissolved in High Resistance Hydrocarbon Media at Microelectrodes Without Supporting Electrolyte

Narrow‐gap cells were fabricated for direct amperometric measurement of alcohol content in liquid hydrocarbon mixtures. Their performance has been investigated using methanol, ethanol, n‐propanol as sample components (ethanol was in most details studied). One type of the insulating materials was applied in order to obtain two copper discs. The surfaces of the copper microdiscs were covered with a Cu_xS modifying layer. The other cell constructed in the similar way had a carbon disc working electrode (with diameter of 30 µm and copper reference/counter electrode 0.3 mm). The amperometric behaviour of the alcohols have been investigated in toluene and n‐heptane solvents without background electrolyte. The amperometric current was found proportional to the ethanol concentration in the investigated range of 0.5–11 v/v%. The sensor’s performance was also tested with ethanol containing fuel products from a gas station.     

A combined approach of differential scanning calorimetry and hot-stage microscopy with image analysis in the investigation of sulfathiazole polymorphism

A combination of differential scanning calorimetry and hot-stage microscopy with image analysis has been used to investigate the polymorphism of sulfathiazole. The use of light intensity profiles obtained from the HSM images, as an alternative way to present results of the HSM analysis, was found to be useful in describing and verifying thermal events. The approach provides a unique insight into the polymorphic transformations and thermal behaviour exhibited by this compound. The results of the experiments show that sulfathiazole tends to crystallise as mixtures of polymorphs, even though the literature methods for producing pure polymorph were followed.     

A wavelet-based adaptive method for determining eigenstates of electronic systems

The possibilities for reducing the necessary computation power in wavelet-based electronic structure calculations are studied. The expansion of the expectation values of energy operators, the integrals of basis functions are mostly system-independent, consequently it is not necessary to compute them in each calculations. Fixed building blocks, such as a parameterized expansion of the nuclear and electron–electron cusp can reduce the amount of necessary calculation. An algorithm for local expansion refinement is also given. It is possible to determine the significant expansion coefficients of a high resolution level without solving the Schrödinger equation using only lower resolution results.     

Qualitative and Quantitative Analysis of Medieval Silver Coins by Energy Dispersive X-Ray Fluorescence Method

Energy-dispersive X-ray fluorescence spectrometry was applied for the analysis of historical silver coins to determine the elemental composition in a fast and non-destructive way. Ag, Cu and trace elements (V, Cr, Mn, Fe, Co, Ni, Hg, Pd, Zr, Mo, Rh, Ru) were determined in coins of King Mathias (Hungary, 1458–1490). A new data evaluation technique was used to avoid the problems arising from the different sizes, surfaces and geometries. The appropriateness of this method was confirmed by analysing certified silver/copper standard alloys.     

Fragmentation‐related phosphinylations using 2‐aryl‐2‐phosphabicyclo[2.2.2]oct‐ 5‐ene‐ and ‐octa‐5,7‐diene 2‐oxides

A series of new P‐methylphenyl P‐heterocycles are introduced. The para and ortho substituted 2,5‐dihydro‐1H‐phosphole oxides ( 1a and 1b ) were converted to the double‐bond isomers ( A and B ) of 1,2‐dihydrophosphinine oxides ( 3a and 3b ) via the corresponding phosphabicyclo[3.1.0]hexane oxides ( 2a or 2b ). Isomeric mixture ( A and B ) of the dihydrophosphinine oxides ( 3a and 3b ) gave, in turn, the isomers ( A and B ) of phosphabicyclo[2.2.2]oct‐5‐enes ( 4a and 4b ) or a phosphabicyclo[2.2.2]octa‐5,7‐diene ( 5 ) in Diels‐Alder reaction with dienophiles. The bridged P‐heterocycles ( 4 and 5 ) were useful in the photo‐ or thermoinduced fragmentation‐related phosphinylation of hydroxy compounds and amines. The new precursors ( 4a and 4b ) were applied in mechanistic investigations. © 2003 Wiley Periodicals, Inc. Heteroatom Chem 14:443–451, 2003; Published online in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/hc.10176     

Syntheses and characterization of Cu,Ni and Zn binding capability of histidinehydroxamic acid derivatives

Two histidinehydroxamic acid derivatives (N-methyl-histidinehydroxamic acid, N-Me-Hisha and Z-histidinehydroxamic acid, Z-Hisha) have been synthesized and their complexation with Cu²⁺-, Ni²⁺- and Zn²⁺-ions has been studied by using pH-potentiometric, UV–Vis, CD, ¹H NMR, EPR and ESI-MS methods. Both of the two new derivatives contain one donor atom less compared to the histidinehydroxamic acid (Hisha). In the case of N-Me-Hisha the hydroxamate-N as donor is eliminated, while the coordination of the amino-N of Z-Hisha is not possible at all.     

Mass fragmentation study of the trimethylsilyl derivatives of arctiin,matairesinoside, arctigenin,phylligenin, matairesinol,pinoresinol and methylarctigenin: Their gas and liquid chromatographic analysis in plant extracts

The mass fragmentation patterns and the characteristic behavior of the trimethylsilyl (TMS) derivatives of the dibenzylbutyrolactone-type (arctiin, arctigenin, methylarctigenin, matairesinoside, matairesinol) and those of the diphenylperhydrofurotetrahydrofurane-type (phylligenin, pinoresinol) lignans, obtained by gas chromatography–mass spectrometry (GC–MS), were presented. It was shown that upon acidic hydrolysis the dibenzylbutyrolactone-type lignans are stable while the diphenylperhydrofurotetrahydrofurane-type ones decompose. As a novelty to the field we confirmed that the fragment species of the derivatized lignan glycosides, in the presence of excess hexamethyldisilazane, leaded to their in situ derivatization. Quantification of the selective fragment ions of the TMS derivatives by GC–MS, in respect of the ions found one by one, and concerning the selective fragment ions {SFI(s)} in total, provided acceptable reproducibilities, suitable for quantitation purposes: varying between 1.20% and 6.6% relative standard deviation percentages (RSD%). For characterization of the behavior of various type of lignans, analyses were performed with the untreated and with the trifluoroacetic acid hydrolyzed plant extracts, from the same sample, in parallel, both by GC–MS and by high performance liquid chromatography–mass spectrometry, working in the positive electron ionization mode (HPLC–ESPI-MS). The analysis of lignans in fruit and leaf extracts (obtained from the Arctium, Centaurea and Forsythia plants) was confirmed both by GC–MS and by HPLC–ESPI-MS. Our multicomponent system (including the identification and quantification of sugars, sugar alcohols, and several members of various homologous series of acids, anthraquinones and flavonoids) has been extended to the analysis of lignan glycosides and to the free lignans. Reproducibilities in the quantitation of lignans in plant matrices, as averages on GC and HPLC basis, varied between 0.9% and 11% (RSD). The distribution of the lignan constituents was presented for 5 Arctium, for 8 Centaurea and for 4 Forsythia plant extracts: the total of lignan contents varied between 0.42 and 87.9 mg/g, respectively.     

Dodecyl sulfate-hydrotalcite nanocomposites for trapping chlorinated organic pollutants in water

A series of hybrid organic-inorganic nanocomposite materials was synthesized by three different procedures using sodium dodecyl sulfate (DDS) and magnesium-aluminum layered double hydroxide (Mg/Al LDH with a Mg/Al molar ratio of 2 to 5). Both the pH of the exchange medium (6.5 to 10) and the Mg/Al molar ratio of the LDH affected the basal spacing, the content of DDS retained and the orientation of the DDS chains within the interlamellar space. For LDH with higher charge density (Mg/Al=2 and 3), DDS molecules likely formed a perpendicular monolayer within the LDH interlayer and the solution pH had little effect on the basal spacing, with a mean and standard deviation of 25.5+/-0.4 A. However, for LDH with lower charge density (Mg/Al=4 and 5), DDS molecules more likely formed an interpenetrating bilayer, and the basal spacing significantly increased with increasing pH, with a mean and standard deviation of 32.7+/-5.2 A. Sorption of trichloroethylene and tetrachloroethylene by DDS-LDH varied with synthesis conditions, LDH type and DDS configuration in the interlayer. DDS-Mg(3)Al-LDH had the highest affinity for both trichloroethylene and tetrachloroethylene in water, either comparable to or as much as four times higher than other clay-derived sorbents, followed by DDS-Mg(4)Al-LDH and DDS-Mg(5)Al-LDH. DDS-Mg(2)Al-LDH had the lowest sorption affinity although the highest amount of DDS. The pH of the exchange solution also affected the amount of DDS retained by the LDH as well as the sorption efficiency. Mg(3)Al-LDH has a charge equivalent area of 32.2 A(2)/charge, which allows the formation of optimal DDS configuration within its interlayer, thus resulting in the highest affinity for the chlorinated compounds. The DDS-Mg/Al-LDHs can be easily synthesized either ex situ or in situ at low temperature, indicating the feasibility of practical applications. The results obtained by controlling the synthesis procedure suggest that different arrangements of DDS molecules in the LDH interlayers can be obtained and optimized for the sorption of specific sorbates.