Application of Impedimetric and Voltammetric Genosensor for Detection of a Biological Warfare: Anthrax

A strategy for the detection of anthrax, which is a potential biological weapon by using an electrochemical genosensing technology, is investigated. An alkanathiol‐linked or unlabeled capture probe related to B. anthracis is immobilized onto gold or graphite electrode surface. A 101‐mer anthrax target is used for hybridization. The extent of hybridization between probe and target sequences is determined by using differential pulse voltammetry (DPV) and electrochemical impedance spectrometry (EIS). EIS analysis are based on electron transfer resistance (R_ct) in the presence of [Fe(CN)₆]^3?/4? and DPV measurements are based on transduction of both guanine oxidation and Meldola's blue (MDB) reduction signal as hybridization indicator. The response of the probe‐modified electrodes which was interacted with a noncomplementary sequence was the same as the responses of probe‐modified surface and proved the specifity of the hybridization with the target. According to these results the developed genosensors based on EIS and DPV techniques can be employed for rapid and selective detection of B. anthracis.     

On Bipartite and Multipartite Clique Problems

In this paper, we introduce the maximum edge biclique problem in bipartite graphs and the edge/node weighted multipartite clique problem in multipartite graphs. Our motivation for studying these problems came from abstractions of real manufacturing problems in the computer industry and from formal concept analysis. We show that the weighted version and four variants of the unweighted version of the biclique problem are NP-complete. For random bipartite graphs, we show that the size of the maximum balanced biclique is considerably smaller than the size of the maximum edge cardinality biclique, thus highlighting the difference between the two problems. For multipartite graphs, we consider three versions each for the edge and node weighted problems which differ in the structure of the multipartite clique (MPC) required. We show that all the edge weighted versions are NP-complete in general. We also provide a special case in which edge weighted versions are polynomially solvable.     

Radical Anions of Sterically Protected Polyenes: An ESR and ENDOR Study

Owing to the steric protection by four bulky substituents in the terminal positions 1 and n, several conjugated polyenes could be reduced with K or Cs metal in 1,2-dimethoxyethane (DME) or tetrahydrofuran (THF) to fairly persistent radical anions. These compounds, denoted here as 2 , 3 ,…︁ 7 (which corresponds to the number, \2 n=2, 3, …︁7, of their formal double bonds) are 1,1,n,n-tetra(tert-butyl) derivatives of buta-1,3-diene, hexa-1,3,5-triene, octa-1,3,5,7-tetraene, deca-1,3,5,7,9-pentaene, dodeca-1,3,5,7,9,11-hexaene, and tetradeca-1,3,5,7,9,11,13-heptaene. In addition to the six polyenes 2 – 7 with all-trans-configuration, the studies comprised an isomer of 3 , the trans,cis,trans-triene, c -3 . The radical anions 2 ^.− – 7 ^.− and c -3 ^.− were characterized by their hyperfine data acquired with ESR, ENDOR, and TRIPLE-resonance spectroscopy. The ¹H-coupling constants comply with the spin distribution predicted for the radical anions of such `linear' π-systems by simple MO models. Ion pairs formed with K⁺ in DME were loose but became tighter with Cs⁺ in THF. Propensity to ion pairing decreased with the lengthening of the π-system on going from 2 ^.− to 3 ^.− – 7 ^.−. Hyperfine data are likewise reported for the radical anions of all-trans-polyenes 8 and 9 , in which two tert-butyl substituents in one terminal position of 2 and 3 , respectively, were replaced by CN groups.     

Role of adsorbed chain rigidity in reinforcement of polymer nanocomposites

The thermomechanical behavior of polymer nanocomposites is mostly governed by interfacial properties which rely on particle–polymer interactions, particle loading, and dispersion state. We recently showed that poly(methyl methacrylate) (PMMA) adsorbed nanoparticles in poly(ethylene oxide) (PEO) matrices displayed an unusual thermal stiffening response. The molecular origin of this unique stiffening behavior resulted from the enhanced PEO mobility within glassy PMMA chains adsorbed on nanoparticles. In addition, dynamic asymmetry and chemical heterogeneities existing in the interfacial layers around particles were shown to improve the reinforcement of composites as a result of good interchain mixing. Here, the role of chain rigidity in this interfacially controlled reinforcement in PEO composites is investigated. We show that particles adsorbed with less rigid polymers improve the mechanical properties of composites. © 2018 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2019 , 57, 9–14     

Developing an early warning system to predict currency crises

The purpose of this paper is to develop an early warning system to predict currency crises. In this study, a data set covering the period of January 1992–December 2011 of Turkish economy is used, and an early warning system is developed with artificial neural networks (ANN), decision trees, and logistic regression models. Financial Pressure Index (FPI) is an aggregated value, composed of the percentage changes in dollar exchange rate, gross foreign exchange reserves of the Central Bank, and overnight interest rate. In this study, FPI is the dependent variable, and thirty-two macroeconomic indicators are the independent variables. Three models, which are tested in Turkish crisis cases, have given clear signals that predicted the 1994 and 2001 crises 12 months earlier. Considering all three prediction model results, Turkey’s economy is not expected to have a currency crisis (ceteris paribus) until the end of 2012. This study presents uniqueness in that decision support model developed in this study uses basic macroeconomic indicators to predict crises up to a year before they actually happened with an accuracy rate of approximately 95%. It also ranks the leading factors of currency crisis with regard to their importance in predicting the crisis.     

SAMPL7 blind challenge: quantum–mechanical prediction of partition coefficients and acid dissociation constants for small drug-like molecules

The physicochemical properties of a drug molecule determine the therapeutic effectiveness of the drug. Thus, the development of fast and accurate theoretical approaches for the prediction of such properties is inevitable. The participation to the SAMPL7 challenge is based on the estimation of logP coefficients and pK_a values of small drug-like sulfonamide derivatives. Thereby, quantum mechanical calculations were carried out in order to calculate the free energy of solvation and the transfer energy of 22 drug-like compounds in different environments (water and n-octanol) by employing the SMD solvation model. For logP calculations, we studied eleven different methodologies to calculate the transfer free energies, the lowest RMSE value was obtained for the M06L/def2-TZVP//M06L/def2-SVP level of theory. On the other hand, we employed an isodesmic reaction scheme within the macro pK_a framework; this was based on selecting reference molecules similar to the SAMPL7 challenge molecules. Consequently, highly well correlated pK_a values were obtained with the M062X/6–311+G(2df,2p)//M052X/6–31+G(d,p) level of theory.

     

Performance of birnessite-type manganese oxide in the thermal-catalytic degradation of polyamide 6

Birnessite-type manganese oxide (BMO) was prepared by oxidation of Mn(NO₃)₂ with H₂O₂ in KOH solution. The nature and the extent of degradation of polyamide 6 (PA6) in the presence of samples were analysed by thermogravimetric analysis under static air atmosphere at several heating rates between 5 and 30 °C min^?1. The surface and structure of BMO were characterized using infrared (IR) spectroscopy, X-ray diffraction, and thermal analysis techniques. The acid sites of BMO were investigated by IR using pyridine as a molecular probe. The activation energy for degradation estimated by Kissinger method for PA6 and BMO/PA6 system containing 10 mass% of BMO was found to be 212 and 144 kJ mol^?1 under air, respectively. The catalytic activity observed in BMP catalyst was associated to a high lattice oxygen mobility.     

A Solution‐processible,n‐dopable polypyrrole derivative

In this study, soluble, n‐dopable, florescent, electrochromic polypyrrole derivative was synthesized through both chemical and electrochemical polymerization of 2‐[6‐(1H‐pyrrol‐1‐yl)hexyl]‐1H‐benzo[de]isoquinoline‐1,3(2H)‐dione (PyNI). The polymer synthesized through chemical polymerization had PL emission maxima at 471 and 543 nm and exhibited two redox couples at E_1/2,p = ?1.48 V and E_1/2,p = 1.12 V due to n‐type and p‐type doping, respectively. Electrochromic properties of electrochemically synthesized poly(PyNI) (PPyNI) were investigated via spectroelectrochemistry, kinetic studies, coloration efficiency, and colorimetry measurements. The optical band gap of PPyNI was calculated as 2.99 and 2.37 eV. Spectroelectrochemistry analysis of PPyNI reflected electronic transitions at 330–418 nm and 704 nm due to π–π* transition and charge carrier band formation, respectively. The polymer exhibited a switching time of 1.63 s and an optical contrast of 33.37%. Furthermore, dual‐type, complementary‐colored polymer electrochromic device in ITO/PPyNI/PEDOT/ITO configuration was assembled and characterized. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

The effects of top management team composition on SME export performance: an upper echelons perspective

Survival of small and medium-sized enterprises (SMEs) increasingly depends on their ability to exploit opportunities in foreign markets. Given their limited resources, exporting is one of the most viable modes of entry into foreign markets for SMEs. The present study is an attempt to contribute to the research that identifies the factors associated with SME export performance. Specifically, the association between top management team demographic composition and SME export performance was examined in an emerging market context and drawing from upper echelons perspective. Focusing on such commonly examined upper echelons attributes as age, education level, and tenure, the present research assessed whether top management team composition distinguished between SMEs in terms of their export levels. Data were collected from 128 SMEs operating in Ankara and Bursa regions of Turkey. Results obtained by a hierarchical regression analysis indicated that SMEs with lower mean industry tenure and higher age separation diversity had higher levels of export performance.     

Monitoring radiation induced alterations in biological systems,from molecules to tissues,through infrared spectroscopy

Humans can be exposed to non-ionizing and ionizing radiation for diagnostic, therapeutic, accidental, and occupational reasons. Consequently, the effect of radiation on biological systems has attracted the attention of researchers for a rather long time. This review is about the mid-infrared Fourier Transform Infrared (FTIR) spectroscopic characterization of non-ionizing and ionizing radiation-induced changes in DNA, lipids, and proteins, as isolated or synthetic macromolecules, and in biological membranes, cells, and tissues. Here, the context of radiation was limited with electromagnetic radiation including gamma rays. The review first outlines introductory information about non-ionizing and ionizing radiation and their interaction with biological systems. Afterwards, FTIR spectroscopy and spectroscopic analysis are briefly discussed. Finally, FTIR spectroscopic analysis of DNA, lipids, proteins, membranes, cells, and tissues that were exposed to radiation are presented. The findings show that FTIR spectroscopy can be successfully used as a novel method to monitor radiation-induced alteratios in biological systems.