Recognition of single nucleotide polymorphisms using scanning potential hairpin denaturation

Conventional single nucleotide polymorphism (SNP) assays, which based their detection on the stringency or temperature of the washing buffers, have encountered difficulties to distinguish a single base pair mismatch from a perfect match. In this study, scanning potential hairpin denaturation (SPHD) has been developed to detect SNP in a sensitive and reliable manner. Combined with hairpin oligonucleotide probes, scanning surface electric potential was used to induce a dissociation of double-stranded DNA around a unique "melting potential" (Vm), and it generated a high-contrast SNP recognition signal. A 21 base pair p53 gene segment was used to test this novel method. A single nucleotide mismatch to the hairpin probes caused an average of 400-800 mV difference in melting potential against the perfect match, while the error of this assay was lower than 20 mV. Experiments demonstrated that the hairpin stem was critical to the method. The concept of scanning potential hairpin denaturation could also be used extensively in different areas of nucleotide hybridization based assays.     

Single-walled carbon nanotube-based coaxial nanowires: synthesis, characterization, and electrical properties

We report herein the template-directed synthesis, characterization, and electric properties of single-walled carbon nanotube- (SWNT-) based coaxial nanowires, that is, core (SWNT)-shell (conducting polypyrrole and polyaniline) nanowires. The SWNTs were first dispersed in aqueous solutions containing cationic surfactant cetyltrimethylammonium bromide (CTAB) or nonionic surfactant poly(ethylene glycol) mono-p-nonyl phenyl ether (O pi-10). Each individual nanotube (or small bundle) was then encased in its own micellelike envelope with hydrophobic surfactant groups orientated toward the nanotube and hydrophilic groups orientated toward the solution. And thus a hydrophobic region within the micelle/SWNT (called a micelle/SWNT hybrid template) was formed. Insertion and growth of pyrrole or aniline monomers in this hybrid template, upon removal of the surfactant, produce coaxial structures with a SWNT center and conducting polypyrrole or polyaniline coating. Raman and Fourier transform infrared (FTIR) spectroscopy and scanning (SEM) and transmission (TEM) electron microscopy were used to characterize the composition and the structures of these coaxial nanowires. The results revealed that the micellar molecules used could affect the surface morphologies of the resulting coaxial nanowires but not the molecular structures of the corresponding conducting polymers. Electric properties testing indicated that the SWNTs played the key roles in the conducting polymer/SWNT composites during electron transfer in the temperature range 77 K to room temperature. Compared with the SWNT network embedded in the conducting polymers, the composites within which SWNTs were coated perfectly by the identical conducting polymers exhibited higher barrier heights during electron transfer.     

锂离子电池用多孔硅/石墨/碳复合负极材料的研究

在两步高能球磨和酸蚀条件下制得了多孔硅/石墨复合材料，并对其进行碳包覆制成多孔硅/石墨/碳复合材料。通过TEM，SEM等测试手段研究了多孔硅材料的结构。作为锂离子电池负极材料，电化学测试结果表明多孔硅/石墨/碳复合材料相比纳米硅/石墨/碳复合材料有更好的循环稳定性。同时，改变复合体配比、热解碳前驱物、粘结剂种类和用量也会对材料的电化学性能产生较大的影响。其中使用质量分数为10％的LA132粘结剂的电极200次循环以后充电容量保持在649.9 mAh·g^-1，几乎没有衰减。良好的电化学性能主要归因于主活性体-多孔硅颗粒中的纳米孔隙很好地抑制了嵌锂过程中自身的体积膨胀，而且亚微米石墨颗粒和碳的复合也减轻了电极材料的体积效应并改善了其导电性。     

Four New Podocarpane‐Type Trinorditerpenes from Aleurites moluccana

Four new podocarpane‐type trinorditerpenenes, (5β,10α)‐12,13‐dihydroxypodocarpa‐8,11,13‐trien‐3‐one ( 1 ), (5β,10α)‐12‐hydroxy‐13‐methoxypodocarpa‐8,11,13‐trien‐3‐one ( 2 ), (5β,10α)‐13‐hydroxy‐12‐methoxypodocarpa‐8,11,13‐trien‐3‐one ( 3 ), and (3α,5β,10α)‐13‐methoxypodocarpa‐8,11,13‐triene‐3,12‐diol ( 4 ), together with four known diterpenes, 12‐hydroxy‐13‐methylpodocarpa‐8,11,13‐trien‐3‐one ( 5 ), spruceanol ( 6 ), ent‐3α‐hydroxypimara‐8(14),15‐dien‐12‐one ( 7 ), and ent‐3β,14α‐hydroxypimara‐7,9(11),15‐triene‐12‐one ( 8 ), were isolated from the twigs and leaves of Aleurites moluccana. Their structures were elucidated by means of comprehensive spectroscopic analyses, including NMR and MS. Except 8 , all compounds were evaluated for their cytotoxicity; compound 4 exhibited moderate inhibitory activity against Raji cells with an IC₅₀ value of 4.24 μg/ml.     

Silica supported potassium oxide catalyst for dehydration of 2-picolinamide to form 2-cyanopyridine

The dehydration of 2-picolinamide to produce 2-cyanopyridine was investigated thoroughly using silica supported potassium oxide as a heterogeneous catalyst. Both large specific surface area and pore size of SiO_2 (B) contributed to the favorable catalytic performance for the synthesis of 2-CP. In addition, the yield of 2-CP showed the linear relationship with the amounts of medium basicity of the catalysts,demonstrating that medium basic sites were the active sites of silica supported potassium oxide catalysts. The catalysts were further characterized by XRD and FT-IR to clarify the active species. The results indicated the Si—O—K group produced by the reaction of K_2CO_3 with Si—OH was the active species, which was further evidenced by the adjustment of the amount of Si—OH by silylation and hydroxylation procedure.     

Influences of hydration force and elastic strain energy on the stability of solid film in a very thin solid-on-liquid structure

Since hydration forces become very strong at short range and are particularly important for determining the magnitude of the adhesion between two surfaces or interaction energy, the influences of the hydration force and elastic strain energy due to hydration-induced layering of liquid molecules close to a solid film surface on the stability of a solid film in a solid-on-liquid (SOL) nanostructure are studied in this paper. The liquid of this thin SOL structure is a kind of water solution. Since the surface forces play an important role in the structure, the total free energy change of SOL structures consists of the changes in the bulk elastic energy within the solid film, the surface energy at the solid-liquid interface and the solid-air interface, and highly nonlinear volumetric component associated with interfacial forces. The critical wavelength of one-dimensional undulation, the critical thickness of the solid film, and the critical thickness of the liquid layer are studied, and the stability regions of the solid film have been determined. Emphasis is placed on calculation of critical values, which are the basis of analyzing the stability of the very thin solid film.     

Photooxidized products of recombinant alpha A-crystallin and W9F mutant

Human lenses contain many photosensitizers that absorb light at wavelengths above 300 nm, most notably UVA light (320-400 nm). Kynurenine (Kyn) and 3-hydroxykynurenine (HK), two of the best-known photosensitizers in the human lens, may play a significant role in photooxidation-related changes in lens proteins, such as conformational change and aggregation. In vitro irradiation experiments with proteins indicate that the Trp residue (with maximal absorption at 295 nm) is more susceptible to photooxidation by UVB light (280-320 nm) than by UVA light, but most UVB light below 300 nm is screened by the cornea and little reaches the lens, especially the nuclear region where nuclear color develops. Therefore, if photooxidation is an important contributor to nuclear color or nuclear cataract, it must arise from a photosensitized reaction. In the present study, we use recombinant alpha A- and its Trp-deficient mutant W9F as models to study the effects of UVA irradiation in the presence of HK or Kyn and of UVB (300 nm) irradiation on alpha-crystallins. alpha A-crystallin showed a large decrease in Trp fluorescence and a large increase in non-Trp (blue) fluorescence after the HK-sensitized or 300 nm photooxidation. For the W9F mutant, a smaller decrease in protein fluorescence (lambda ex at 280 nm) and a smaller increase in blue fluorescence than for the wild-type alpha A-crystallin were observed. A decrease in the near-UV CD was also observed for both photooxidized alpha A and the W9F mutant. The effect of Kyn sensitization is smaller than that of HK sensitization. A study of chaperone-like activity indicated that only 300 nm photooxidized alpha A and the W9F mutant increased the ability to protect insulin from dithiothreitol-induced aggregation. Thus, sensitized photooxidation can occur in amino acids other than Trp by UVA in the presence of HK or Kyn with effects similar to, albeit smaller than, those of direct UVB (300 nm) photooxidation.     

C36 fullerenes and quasi-fullerenes: computational search through 598 cages

C₃₆ is computed at the SAM1 level and partially also at the HF/4-31G and B3LYP/6-31G^* levels. Altogether 598 cages are generated by a topological Stone–Wales treatment. Three cages contribute by more than 10% to the high-temperature equilibrium isomeric mixture – two conventional fullerenes with D_2d and C_2v symmetries and a C_s quasi-fullerene containing one four-membered ring.     

INVESTIGATION OF THE ALLOMERIZATION REACTION OF CHLOROPHYLL a: USE OF DIODE ARRAY HPLC, MASS SPECTROMETRY AND CHEMOMETRIC FACTOR ANALYSIS FOR THE DETECTION OF EARLY PRODUCTS

Abstract –The products of chlorophyll allomerization in methanol were isolated and analyzed by open column sucrose chromatography, liquid chromatography mass spectrometry (LCMS) and DAD-HPLC (diode-array high-performance liquid chromatography). Four main bands were found with molecular ions of (a) 908, (b) 938, (c) 938 and (d) 938, consistent with the structures (a) 13²-hydroxy-chlorophyll a (II), (b) and (c) Mg(II)-3¹,3²-didehydro-15¹-hydroxy-15¹-methoxy-rhodochlorin-15 acetic acid δ-lactone 15²-methyl 17³-phytyl ester and its epimer (III) and (d) Mg(II)-3¹,3²-didehydro-rhodochlorin-15-glyoxylic acid 13¹,15²-dimethyl 17³-phytyl ester (IV), evidence enhanced by UV/visible spectroscopy, chromatographic coelutions and chemometrics. Chlorophyll a was degraded both in the dark and light, under O₂ and N². DAD-HPLC of the resultant degradation mixtures were analyzed using the chemometric heuristic-evolving latent projection method for resolution. Ultraviolet/visible spectra of II and III are reproducibly extracted from the mixtures after a short degradation time, whereas III and IV are the dominant compounds after longer degradation times. Changes in relative elution order of IV using open column chromatography and reverse-phase HPLC are established. A possible allomerization pathway is proposed.     

Application of cold neutron prompt-gamma activation analysis in environmental studies of aquatic plants

This paper describes the use of cold-neutron prompt-gamma activation analysis (CNPGAA) to determine carbon, nitrogen, and phosphorus in the aquatic plant Typha domingensis, commonly known as cattail, during spring and fall seasons. According to studies of the Florida Everglades, cattail replaces sawgrass as a result of nutrient enrichment from farm water runoff. Nutrient enrichment, especially phosphorus, in sediment and the water column can lead to undesirable expansion. Early signs of this expansion are apparent in the Apalachicola River floodplain near Apalachicola, Florida, USA. This research project is designed to use cattails as biomonitors of nutrient enrichment in the lower Apalachicola River floodplain. Determination of carbon, nitrogen, and phosphorus in cattail using cold neutron prompt-gamma activation has been developed in our previous studies at the CNPGAA facility at the National Institute of Standards and Technology (NIST), USA. The results of numerous field samples, collected from the study area during spring and fall seasons in 2002, will be presented in this paper.