Energy absorption buildup factors of some potential bioactive compounds in the energy region 0.015–15 MeV

Kinetic energy released per unit mass relative to air and energy absorption buildup factors has been calculated for some potential bioactive compounds in the energy region of 0.015–15?MeV. The bioactive compounds of 1-aryl-3-dibenzylamino-propane-1-on hydrochloride type Mannich bases were used in this work. Aryl part was changed as C₆H₅ (1), 4-CH₃C₆H₄ (2), C₄H₃S-2-yl (3), 4-FC₆H₄ (4), 4-BrC₆H₄ (5), 4-ClC₆H₄ (6), and 4-NO₂C₆H₄ (7). The energy absorption buildup factors have been calculated for penetration depth of 40 mean free paths. It is observed that kinetic energy released per unit mass relative to air depends on the photon energy and chemical content of compounds. The compounds with least mean atomic number possess the maximum value of energy absorption buildup factors. Also, the energy absorption buildup factors are found the highest in intermediate energy, whereas the lowest in low as well as high energies.     

Simultaneous birefringence,small‐ and wide‐angle X‐ray scattering to detect precursors and characterize morphology development during flow‐induced crystallization of polymers

An experimental configuration that combines the powerful capabilities of a short‐term shearing apparatus with simultaneous optical and X‐ray scattering techniques is demonstrated, connecting the earliest events that occur during shear‐induced crystallization of a polymer melt with the subsequent kinetics and morphology development. Oriented precursors are at the heart of the great effects that flow can produce on polymer crystallization (strongly enhanced kinetics and formation of highly oriented crystallites), and their creation is highly dependent on material properties and the level of stress applied. The sensitivity of rheo‐optics enables the detection of these dilute shear‐induced precursors as they form during flow, before X‐ray techniques are able to reveal them. Then, as crystallization occurs from these precursors, X‐ray scattering allows detailed quantification of the characteristics and kinetics of growth of the crystallites nucleated by the flow‐induced precursors. This simultaneous combination of techniques allows unambiguous correlation between the early events that occur during shear and the evolution of crystallization after flow has stopped, eliminating uncertainties that result from the extreme sensitivity of flow‐induced crystallization to small changes in the imposed stress and the material. Experimental data on a bimodal blend of isotactic polypropylenes are presented.     

Solvent effects on glycine II. Water-assisted tautomerization

The water-assisted tautomerization of glycine has been investigated at the B3LYP/6-31+G** level using supermolecules containing up to six water molecules as well as considering a 1:1 glycine-water complex embedded in a continuum. The conformations of the tautomers in this mechanism do not display an intramolecular H bond, instead the functional groups are bridged by a water molecule. The replacement of the intramolecular H bond by the bridging water reduces the polarity of the N-H bond in the zwitterion and increases that of the O-H bond in the neutral, stabilizing the zwitterion. Both the charge transfer effects and electrostatic interactions stabilize the nonintramolecularly H-bonded zwitterion conformer over the intramolecularly hydrogen bonded one. The nonintramolecularly H-bonded neutral is favored only by charge transfer effects. Although there is no strong evidence whether the intramolecularly hydrogen bonded or non hydrogen bonded structures are favored in the bulk solution represented as a dielectric continuum, it is likely that the latter species are more stable. The free energy of activation of the water-assisted mechanism is higher than the intramolecular proton transfer channel. However, when the presumably higher conformational energy of the zwitterion reacting in the intramolecular mechanism is taken into account, both mechanisms are observed to compete. The various conformers of the neutral glycine may form via multiple proton transfer reactions through several water molecules instead of a conformational rearrangement.     

Elimination of water from the carboxyl group of GlyGlyH+

The elimination of water from the carboxyl group of protonated diglycine has been investigated by density functional theory calculations. The resulting structure is identical to the b(2) ion formed in the mass spectrometric fragmentation of protonated peptides (therefore named "b2" in this study). The most stable geometry of the fragment ion ("b2") is an O-protonated diketopiperazine. However, its formation is kinetically disfavored as it requires a free energy of 58.2 kcal/mol. The experimentally observed N-protonated oxazolone is 3.0 kcal/mol less stable. The lowest energy pathway for the formation of the "b2" ion requires a free energy of 37.5 kcal/mol and involves the proton transfer from the amide oxygen of protonated diglycine to the hydroxyl oxygen. Fragmentation initiated by proton transfer from the terminal nitrogen has also a comparable free energy of activation (39.4 kcal/mol). Proton transfer initiating the fragmentation, from the highly basic terminal nitrogen or amide oxygen to the less basic hydroxyl oxygen is feasible at energies reached in usual mass spectrometric experiments. Amide N-protonated diglycine structures are precursors of mainly y(1) ions rather than "b2" ions. In the lowest energy fragmentation channels, proton transfer to the hydroxylic oxygen, bond breaking and formation of an oxazolone ring occur concertedly but asynchronously. Proton transfer to hydroxyl oxygen and cleavage of the corresponding C-O bond take place at the early stages of the fragmentation step, while ring closure to form an oxazolone geometry occurs at the later stages of the transition. The experimentally observed low kinetic energy release is expected to be due to the existence of a strongly hydrogen bonded protonated oxazolone-water complex in the exit channel. Whereas the threshold energy for "b2" ion formation (37.1 kcal/mol) is lower than for the y(1) ion (38.4 kcal/mol), the former requires a tight transition state with an activation entropy, DeltaS++ = -1.2 cal/mol.K and the latter has a loose transition state with DeltaS++ = +8.8 cal/mol.K. This leads to y(1) being the major fragment ion over a wide energy range.     

Substituent effects to the electrochromic behaviors of electropolymerized metallophthalocyanine thin films

Metallophthalocyanines (MPcs) (M = 2H⁺, Zn²⁺, Co²⁺, and Cu²⁺) bearing diethylaminophenoxy and chloro substituents at the peripheral positions (MPc-tdea-tCl) were coated on the working electrodes with the electropolymerization and tested as electrochromic materials. Altering the metal center of MPcs affected the redox activities of MPc-tdea-tCl films. All electropolymerized MPc-tdea-tCl films behaved as conductive and redox active films in different electrolyte systems. Electrochromic properties of MPc-tdea-tCl films were investigated via the voltammetric, in situ spectroelectrochemical, and in situ spectroelectrocolorimetric measurements. H ₂ Pc-tdea-tCl film did not give any electrochromic response, while ZnPc-tdea-tCl and CuPc-tdea-tCl films behave as a reasonable electrochromic material. Distinctive color changes with short response times, high optical contrast, and better optical and coulombic stabilities were only observed with CoPc-tdea-tCl film.     

Antioxidant and cytotoxic properties of some new dipeptide-indole conjugates

In this study, 10 new indole-dipeptide conjugates were synthesized, and their anticancer activity was determined against on A2780 (ovarian cancer cell line) and MCF-7 (breast cancer cell line) cells. Among compounds, 5 and 10 showed better activity against A2780 cell lines than the standard drug docatexel at 0.1 and 1 μM concentrations, while only compound 5 showed better activity than docatexel, the MCF-7 cell line at 0.1 and 1 μM concentrations. The antioxidant potencies of the compounds were low in both the DPPH and iron reducing power methods tested when compared to standard antioxidants used in this work.     

OrdnungszustÄnde und diamagnetische SuszeptibilitÄt in PolyÄthylen

Ohne ZusammenfassungEiner von uns (F. J. B. C.) ist der Alexander-von-Humboldt-Stiftung für ihre Unterstützung wÄhrend dieser Arbeit zu au\erordentlichem Dank verpflichtet. HerrnR. Grewe möchten wir für seine Hilfe bei der Durchführung der Messungen herzlich danken. Herr Dr.H. Knoll hat uns die Benutzung der Magnetwaage am Institut für Anorganische Chemie der FU ermöglicht. Wir möchten ihm ebenfalls unseren Dank aussprechen. Ebenso danken wir der Deutschen Forschungsgemeinsehaft für ihre Unterstützung.     

Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2

We present the performance of HADDOCK, our information-driven docking software, in the second edition of the D3R Grand Challenge. In this blind experiment, participants were requested to predict the structures and binding affinities of complexes between the Farnesoid X nuclear receptor and 102 different ligands. The models obtained in Stage1 with HADDOCK and ligand-specific protocol show an average ligand RMSD of 5.1 Å from the crystal structure. Only 6/35 targets were within 2.5 Å RMSD from the reference, which prompted us to investigate the limiting factors and revise our protocol for Stage2. The choice of the receptor conformation appeared to have the strongest influence on the results. Our Stage2 models were of higher quality (13 out of 35 were within 2.5 Å), with an average RMSD of 4.1 Å. The docking protocol was applied to all 102 ligands to generate poses for binding affinity prediction. We developed a modified version of our contact-based binding affinity predictor PRODIGY, using the number of interatomic contacts classified by their type and the intermolecular electrostatic energy. This simple structure-based binding affinity predictor shows a Kendall’s Tau correlation of 0.37 in ranking the ligands (7th best out of 77 methods, 5th/25 groups). Those results were obtained from the average prediction over the top10 poses, irrespective of their similarity/correctness, underscoring the robustness of our simple predictor. This results in an enrichment factor of 2.5 compared to a random predictor for ranking ligands within the top 25%, making it a promising approach to identify lead compounds in virtual screening.     

Thioxanthonation of fluorenone: Visible photoinitiator for radical polymerization

Thioxanthonation of fluorenone resulted in a new visible light initiator namely, indeno [1,2‐b]thioxanthene‐7,13‐dione (TX–FN). The detailed photophysical properties of the singlet and the triplet excited states of TX–FN are reported using steady‐state absorption, fluorescence, and phosphorescence, as well as laser flash photolysis techniques. Photoinitiated polymerization of MMA with TX–FN and CQ has been investigated in the presence and absence of a co‐initiator (MDEA). Additionally, Photo‐DSC studies were performed both in mono‐ and multiacrylate systems with TX–FN and parent compounds TX and FN. The obtained results were compared for formulations consisting of CQ. At low initiator concentrations, the conversions were lower than those obtained with TX–FN. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 54, 1012–1019     

Mechano-optical behavior in poly (ethylene terephthalate)/poly (ether imide) blends

Mechano-optical behavior and related structural evolution during uniaxial stretching of melt miscible poly (ethylene terephthalate) (PET)/poly (ether imide) (PEI) blends were studied near their glass transition temperature using an instrumented machine that measures true stress, true strain and spectral birefringence simultaneously. Stretching from amorphous state, two distinct stress-optical regimes were observed at temperatures between T_g and T_cc (cold crystallization). Near T_g, a typical photoelastic behavior persists until a critical temperature above which temperature independent initial stress optical behavior is observed. At those temperatures above T_g, where glassy behavior is observed, decreasing stretching rate was also found to eliminate this glassy photo elastic regime leading to the observation of a linear initial stress optical behavior that becomes temperature independent as expected from linear stress optical rule. Increasing PEI concentration in the blends suppresses crystallizability and increases temperature at which initial elastic region disappears giving way to pure liquid behavior where linear stress optical behavior is observed. This is attributed to the increase and broadening of the glass transition temperature with the addition of noncrystallizable PEI. In PET/PEI blends, the stress-optical coefficient (SOC), determined in a linear stress optical regime, was found to increase linearly with the increase in PEI concentration.